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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0014700.1

CGACAAATGTACTGCAAATTTTCACTGAGGGGGCACGGTAACAATACATGAACGGGTGAACCCGATAAAGTATATATGTACATCGATGAAGGGGCAAACAACAAAAAAAAAAAAAAAAACGACTCCCTACAAAATTGCTGGCTGTGTGAGAACAGCCGTCATAAGGTATTTACACAGCAGGAAACAAAAAGCCTGCCCATTATCATCATCATCTACTCATTAGGTTCCAGCCATTTCTTCAGGTTGCAAAGGGCCTCTGAAGACAGGCTCTTGCAACATCTAACCCTCCTGATCGGCGCCTGCTCCGAAGACGGTGAACCACCACCGAGCTCAGATCCAAAGCAGATGACTATCACCGTGAGGTTGTCAAAGGTCTGGAGCCTCTTCGCCTCCATGGCAAGCTCCCTCGCGCACCTCTCGGGGTCATCGTGTCGTCGGAGCCCCTTGCGGACTATGGTCACCGCGTGCTGGCTGCTCATGACGTCCCATATCCCATCGCAGCCTATGATGAGGAACTCGTCGTCTTCGGTGAGTGTGGTTTGCTGGAACTCTGGCTCGGCGATGAGAGGCGACCGCGAGCCTTGAGGCATTTTCATGTCCCAATCCCCCAATGCCCTGGTCACAGATAGTACTCCATTGAGGTAGCCATCCTCAATGTATCCCCCACACTCGGTAATCCTTTCATGCTCTGCATCATATGTTGGCCTGTGATCACGAGACATCTCCACAGCTACACCTTTCCGACACAGGACCGCGCGGCAGTCCCCAGCATTCGCGACCAACAGCTGCCTTCCAAATATCAAAGCAGCAAGAGCTGTTGTTCCTGATGATCGGCTGATAGCCAAATCGTCAGCGAGAGCAAGGTCTGCGCTCAAGAATGCATTGTGGATAGATTTCTCAACTGATTCATAAAATGATTCATCTTCTTCTAATGCCTGTGGGAACTCAGAATCCTCAAAGAACAGCCTTATAGCATGCCTTTTCATGTAGGCTGCTGCATCTGGACCCCCATGGCCATCAAAGACCTAAAAATACAACGGCGTAATCAACTAATTCGCAGTACAAAATATGATAAAAATCGGTTGAAGCTCTTATTAGTTTCTTGCATACCCCATAGAAGGCATTAGGTGCAGGGCACATCAACAGTGAGCCAAGATGACCAGAAAGATCATCAATTCTGATATGTTCATCTTCCATGTACCGCCTAGGTCCAATATCGGCAAAGCTACCAGATCGAATGTTGGGGGAAAACTGTAGTGATTCCACGGGTGCCTTAACCATCAGTTCAGGCACCTCGATGGCGGCTTCCGAGGCAGCCTCCGGCGACATCTCCTCCACCGGCGGCGACACCTCGTCGACCCCCTTCACGGAGCACCGGCGGTGGAACGACGCCTCCAGCAGCGGCACGACCTGATGCATCACCTCCGCCCCGGCCACCATCACCGCCTCCTCCCCCGAACCGCTCAACAACCCGCTCGTCCTCCCCAACCGCGAAATCCAACCGGAAACCACCCCCCACAAACCAAACCAAGAACTCCCCCAACCAACCAAGCTTCCAACAACACCTCTCTCGATCACACGCAAAGCACTCTCTCTCGAAAGATTTTGACTCGGCTGCAATCAAAGCTTCTTTCCGGGGAAAACATACAACGAACACGAACACGGAGACTTGTTCTTCTTCTTGCGTGATCCGAAGAGGAGAAAGAAAGAAAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.836385
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0014700.1 1 10806077 G C
Osa01LNT0014700.1 1 10806403 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0014700.1 osa-miR5337b Translation 5.0 17.141 1 21
Osa01LNT0014700.1 osa-miR166k-3p Cleavage 5.0 24.042 1 21
Osa01LNT0014700.1 osa-miR166l-3p Cleavage 5.0 24.042 1 21
Osa01LNT0014700.1 osa-miR2055 Cleavage 4.0 13.266 1 21
Osa01LNT0014700.1 osa-miR2097-3p Cleavage 3.5 18.081 1 22
Osa01LNT0014700.1 osa-miR2927 Cleavage 4.0 23.935 1 23
Osa01LNT0014700.1 osa-miR3982-3p Cleavage 5.0 22.736 1 21
Osa01LNT0014700.1 osa-miR5521 Translation 4.5 14.497 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0014700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0014700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0014700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0014700.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0014700.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0014700.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0014700.1 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus