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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0174600.1

ACCGTGCCTCCTCCCTCCTCTTCCACCACTTTGGCGAGACAATAGTGAGCTTGAGGTTCACTGCTTCCTCTTCCTTGGCGAGACATTGGTATCCCTTTCTTCCTCCTCATCCTCAGCCACCAACCCGCGCCTCATCCCCAACGATACGACACAAGGTCATCGTTGTGCACATTTTTCTTCTTCAGATCTAGCCGCAGACGAGGTCGAGATGAGGCAAGCCAAGTGCCGGCAAGACTACATGGCAATTGTTAAGCAGAGCCGGCAGCTGATAGAAAAGCTGGACGCAAAGAATGAACCAAAGAAGAGGCAGAAGCGATCAAAGAACTCTGAAAAAGAAAAGGCGGTCGCCCCGAGCTCGTCTAAGAAAATGGACCGCGAAGAGCTCGAGAAGACCATCAGGGGTTTCCTGAAGGAGCTCGATTCGACTGAAGCTGCTCCAATGAGAACAACTGGATGTACGAGTGCAATGCGACCTAGTACTATCGATCAGGACTTCAATACTCAATAGTTACCCCCAACATTTCAGGATTTTGCACAAGAAGATGAATCATTCTAACA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.375279
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0174600.1 2 25150232 G C
Osa02LNT0174600.1 2 25148968 T C
Osa02LNT0174600.1 2 25149010 C T
Osa02LNT0174600.1 2 25149137 T A
Osa02LNT0174600.1 2 25149365 C A
Osa02LNT0174600.1 2 25149601 C T
Osa02LNT0174600.1 2 25149957 C T
Osa02LNT0174600.1 2 25150205 C A
Osa02LNT0174600.1 2 25148899 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0174600.1 osa-miR395b Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395d Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395e Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395g Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395h Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395i Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395j Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395k Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395l Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395s Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395t Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395a Translation 4.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395f Translation 4.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395m Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395n Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395p Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395q Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395r Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR395x Translation 4.0 9.462 1 21
Osa02LNT0174600.1 osa-miR395y Translation 3.5 9.462 1 21
Osa02LNT0174600.1 osa-miR5495 Translation 4.5 13.388 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0174600.1 2 qRPA-2-c Resistance or Tolerance Other soil stress tolerance C424 G45
Osa02LNT0174600.1 2 Tiller number Morphological trait Culm/leaf R26 C424
Osa02LNT0174600.1 2 Sn2a Morphological trait Dwarf C424 G45
Osa02LNT0174600.1 2 qRTT2-1 Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0174600.1 2 nan Others Others C424 G45
Osa02LNT0174600.1 2 nan Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0174600.1 2 qPTD-2 Morphological trait Panicle/flower C424 G45
Osa02LNT0174600.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0174600.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0174600.1 2 nan Resistance or Tolerance Insect resistance RG157 RZ318
Osa02LNT0174600.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0174600.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0174600.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0174600.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0174600.1 2 Hbd2 Physiological trait Lethality nan nan
Osa02LNT0174600.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus