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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa01LNT0014800.1

AAATAAAAGTGAATGGAATATACCAAAATATACAAACTATCAATGTAGTATAGCATACTTCCTAAACACAATCCAATTTCTATATCAACAGGATCTTTGTATTGCTCCTGCAATTTTCACTAAACTACTAATGAACAGAACCCTGTATCATCGATGCGAGTGATGGGTGGACTCGAGCAGTTTTCATTGACCGTGCAACACATCTTCCATCTGAATATTCCTCACCAAGAGGCCACCTTGGACGCAGGTCATACTGCAAATCATCAGGCTCATCAACAGCAGGAGGATCATCAAATCTGCCTGCAATGAAATGCTCAATACCAGTCCAAGCAATCATGACACCATTGTCAGTGCAAAGCCTTGGTGGAGGGCATACGAGCTGTAGGCCATTCTTCTCAGCAATCTGATTCAAATGAGTTCTGACATACTGGTTTGATGCAACGCCTCAAAGTATTTAATAGAAGGCTCCATCTTCAAGGCCCATTCAACTGCTCGTTGGCATCTTTCTTCCAAATGTAAAACAGCAACTCACTGAAAAGAGGCAGCAATGTTCGCCCTTATTTGTCTGTCATCTTTTGTAGCAGATGAAATAGGAATATCATCTGTTGATATGTTTCTGGATTCAATAGCCAATCGAACTTGAGTCTTCAGACCAGCATAAGAGAAATTGCAATCTTTGTGTTGTCGCATCGAAACCTGGAAACTAATGCCTGTGCCTCCATATGATGAACTCCAACAATAGGCAGGTGAAATGATTTTGCTATTTTTCGAGCTTTGTGAACACCAACTCTGAGGCATAAACTAAGTCCTGGTCCTACGGTGACAGCCACTGCAGAAAGATCACTTTCTGACACATTTGCATTATCAAGTGCTTTCTGGACAACCCGATCAATCGCAAGCAAATGAGCTTCCTCAGCCATCTTCGGTGCGACGCCTCCCCACCTCACGAGTAAATCTTCTTGGGAAGATACCACCTGGCTTAGGATCTCGCCATCGCCTCTAACCACGGCGGCGGCGGTGTCGTCGCAGCTGGTCTCGATGCCGAGCATGAGGAGGTTGCCGTGATCGGGGGTGGCCCGTGAACCGGCGGCGGAGGGCATTGTGGAGAGGGAGCGGAAGGTAGGAGACCGTACCGGCGGGGAGGGGGCGGGGGCGAGGAGGCGTCGGAGGAGGAGACCGGCGGCGATAAGGTGGGGAAAAGAGTGGCCGCCATTCCACCGTGGCTCGGCTTTGCACTCTCTC

Coding Potentia
Explanation CPC Score
noncoding -1.1193
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0014800.1 1 10814931 A G
Osa01LNT0014800.1 1 10815020 C A
Osa01LNT0014800.1 1 10815782 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0014800.1 osa-miR5530 Translation 5.0 18.663 1 21
Osa01LNT0014800.1 osa-miR812p Translation 5.0 17.227 1 24
Osa01LNT0014800.1 osa-miR397a Translation 5.0 18.112 1 21
Osa01LNT0014800.1 osa-miR156l-5p Cleavage 5.0 15.4 1 21
Osa01LNT0014800.1 osa-miR1851 Translation 4.0 19.239 1 21
Osa01LNT0014800.1 osa-miR812n-5p Translation 4.5 17.77 1 24
Osa01LNT0014800.1 osa-miR3981-5p Translation 5.0 6.481 1 21
Osa01LNT0014800.1 osa-miR5144-5p Translation 5.0 14.334 1 21
Osa01LNT0014800.1 osa-miR5144-5p Cleavage 4.5 18.285 1 21
Osa01LNT0014800.1 osa-miR5148a Translation 5.0 14.127 1 24
Osa01LNT0014800.1 osa-miR5148b Translation 5.0 14.127 1 24
Osa01LNT0014800.1 osa-miR5148c Translation 5.0 14.127 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0014800.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0014800.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0014800.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0014800.1 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
Osa01LNT0014800.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0014800.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0014800.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus