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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0175100.1

TTGTCCCTTTGCTCTTGCTTACTCTAGTATACTCCTACTTCCCAGCCTTTATAGCCTTCTGCCTTCTTCCTCACCTCACATATTTTTTTTCTTGGACTTCTTGGCGATGGATCCCCCACCGGCTCAGGCGATGAACACCGACGACTTCACGGACAAGACCATGGATGAATGTTGTTCTTGCTGCTACGATTGCTGCTCCAGCATCCTGGATTTCCTCTGCTGTTCTTGATGCTGCCCCTCGTCAACCTTGCAGAAACTTCATGGGTGCTGACGATGAGTGAATCAGAAGTCTCGGTGATATATTTTGGGCTGTACAAGTTATTGAATTCTTAGATTAATTCTTCCTCCCTTGCGTTGTAACTGAGATTTGTGCGTCACTTTATGGATGATTTTGGGAGGAAATTTGTGCACTATCAAGTTCTGAAACATCGATTTGTCTTCCAGCCTTTTGCGGTATCCCTGAAGTGTTGTATATGGTATGAAAATCTCTTGAGTTCCCCTGATGATAGTTGATGCTTCGTGCCATCAGCAAAGTGTAACTCGAGCCAAGAAAATTCATGCACGACGATGGTGTTTGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.919722
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0175100.1 2 25410353 A G
Osa02LNT0175100.1 2 25410758 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0175100.1 2 nan Others Others C424 G45
Osa02LNT0175100.1 2 qRPA-2-c Resistance or Tolerance Other soil stress tolerance C424 G45
Osa02LNT0175100.1 2 Tiller number Morphological trait Culm/leaf R26 C424
Osa02LNT0175100.1 2 Sn2a Morphological trait Dwarf C424 G45
Osa02LNT0175100.1 2 qRTT2-1 Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0175100.1 2 nan Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0175100.1 2 qPTD-2 Morphological trait Panicle/flower C424 G45
Osa02LNT0175100.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0175100.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0175100.1 2 nan Resistance or Tolerance Insect resistance RG157 RZ318
Osa02LNT0175100.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0175100.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0175100.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0175100.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0175100.1 2 Hbd2 Physiological trait Lethality nan nan
Osa02LNT0175100.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus