Transcript

Sequence

>Osa02LNT0175700.1

GCACTAGCCACAAGTGTAGTTGACTTGTCCTTTCCTAAGAACTCGCGAGCAGAGCTTTCAACTGTCTGAATTGCTTGACAAATACATCAGCCAAAATGAAGCATAGACTCAAAGATAACAATTTATACCAAAGTACTACCTCCGTCCCAAAATAAGCGCAGCCATGAGTTTCTGCGCCCAATTTTGATCGTCCGTCTTATTTGAAATTTTTTTATAATTAGCATTTTTATTGTTATGAGATGATAAAACATAAATAGTACTTTACTCGTGACTTCTGTTTTTAATTTTTTTTAAAAAAGTTTTCAAATAAGAGGCACAGAAAACCATGGCTGCACTTATTTTGGGACGGAGGGAGTAATTCATAGATTTGAGTAAAGAACAAACCAATCGAAGTATCTGATGGGATCTAGAACTTTTTTCGTTTAAGA

Coding Potentia

Explanation	CPC Score
noncoding	-1.37741

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0175700.1	osa-miR812p	Cleavage	1.0	16.654	1	24
Osa02LNT0175700.1	osa-miR812s	Translation	3.5	16.147	1	24
Osa02LNT0175700.1	osa-miR812t	Cleavage	3.5	14.387	1	24
Osa02LNT0175700.1	osa-miR812u	Cleavage	3.5	14.387	1	24
Osa02LNT0175700.1	osa-miR812v	Translation	4.0	13.674	1	24
Osa02LNT0175700.1	osa-miR6248	Cleavage	3.5	12.413	1	21
Osa02LNT0175700.1	osa-miR812a	Cleavage	3.5	16.654	1	22
Osa02LNT0175700.1	osa-miR812b	Cleavage	3.5	16.654	1	22
Osa02LNT0175700.1	osa-miR812c	Cleavage	3.5	16.654	1	22
Osa02LNT0175700.1	osa-miR812d	Cleavage	3.5	16.654	1	22
Osa02LNT0175700.1	osa-miR812e	Cleavage	3.5	16.654	1	22
Osa02LNT0175700.1	osa-miR1436	Cleavage	5.0	11.875	1	21
Osa02LNT0175700.1	osa-miR1439	Cleavage	3.5	7.573	1	21
Osa02LNT0175700.1	osa-miR812f	Cleavage	2.5	16.864	1	24
Osa02LNT0175700.1	osa-miR812g	Cleavage	1.5	16.147	1	24
Osa02LNT0175700.1	osa-miR812h	Cleavage	1.5	16.147	1	24
Osa02LNT0175700.1	osa-miR812i	Cleavage	1.5	16.147	1	24
Osa02LNT0175700.1	osa-miR812j	Cleavage	1.5	16.147	1	24
Osa02LNT0175700.1	osa-miR812k	Cleavage	4.0	16.864	1	24
Osa02LNT0175700.1	osa-miR812l	Cleavage	4.0	16.864	1	24
Osa02LNT0175700.1	osa-miR812m	Cleavage	4.0	16.864	1	24
Osa02LNT0175700.1	osa-miR812n-5p	Cleavage	2.0	15.216	1	24
Osa02LNT0175700.1	osa-miR812n-3p	Cleavage	3.5	14.387	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0175700.1	2	Hbd2	Physiological trait	Lethality	nan	nan
Osa02LNT0175700.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263
Osa02LNT0175700.1	2	qPTD-2	Morphological trait	Panicle/flower	C424	G45
Osa02LNT0175700.1	2	nan	Others	Others	C424	G45
Osa02LNT0175700.1	2	qRPA-2-c	Resistance or Tolerance	Other soil stress tolerance	C424	G45
Osa02LNT0175700.1	2	Tiller number	Morphological trait	Culm/leaf	R26	C424
Osa02LNT0175700.1	2	Sn2a	Morphological trait	Dwarf	C424	G45
Osa02LNT0175700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0175700.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0175700.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0175700.1	2	yld2.1	Morphological trait	Seed	RM262	RM263
Osa02LNT0175700.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0175700.1	2	nan	Physiological trait	Eating quality	C621	C370

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus