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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0176400.1

GGCGGCGTCAACACTCAAGATTTAAATAAATCAATGATGAACATTTACAATGACATACCGGTTATATTCCAGTTACAACGAACAACGAACATGATCATAATACATAATGAATGACGAGGCATCTGCAGCGAGTTTTCTATTTCTCCTGTATATATGTACTTGCCTATCAGTTTCTCCTTTTTAGTGCCATTTATCACACAACCGAAACCTGGATTTTGCGATAAACTTGCTCACCAGGCTCGGCAAATCAGCAGTTAGCAACTGACGTTCCTCGCTCAAGCTTGCTTCTAGATATCGGAGCTGTTTTACTATAGGACGAAATGGTCGATCATATGGTTTATGACATCGGCACCTTCGCTATGCATAACGGGATCTTTGACCTGAATCACACTATGTGCTGCAGATCTTACTTTGCTGTTGTGGAAGCTGACATCCACCTTTTCCCACGACACAAGCTTCAGACCTCTTAAAAGCCGTTCTTCTAACATGCAGCTGTCCACATCGGCAACATCAGTACATTGATTCATTGTTTCTGCTTTGGATAGTTCTTCATATACAATATGTGGGTAAATCTTGCTTCCTGAATCAGTCCACTTCGGTAGCTCAGAATTTCGCCTGATGGATGATGTTCTCCACCCAACAATATGATCATGACCAACATTGGAGTATGCAACTCTTCGTTTGAATACTTTCAGAGCAGACATGAACTGTACGCCCCCCCAATCATCCACCATGCGTAGCAACAATGGAGGCTTCCCATCATCATTGTCCATAAGAAATAGATGCTTGCCAGTTTTTCCGAATATCAAATGAATGATGTAGCTGGCAAAAGTTTCTATTGCAGTAAATCCAAAAAGGAAAGGAACCTGTTTGTTTCCTCTAGAACCAAGATGCGGTGACGCAACAGTTATGAAGTTCACTGCCTCAAGCCCATGTATAGTACCCTTATTAGTGTTGTTCAGATTCTGAGAACTTTGGGATGTTTGTTTAGGTGGCCTATAGAGTCTTCCAATAGCATATCTTGCAACCAATCCTCCAACAGAATGTGCAACAAAAGAGATCTTTCTGATCTGTGGTCTTTTGTTGGTTTCTTCAACAATCTCTTGTGCCAACCGCTCACCCATCACATCAACGCCATCTAAAGTTAGCTTGTACATGTTGCGATTGCTACGATGAACTATAACTTTGTCTGACAGCAACTTTTCAAATTGCTCAGCTCCAAACTTCCAATCAGCTGCACTCCCGACGATCCCGTGGACCATGACCACCAGGTGGTCGGGCTCGGGCCCGACGCCGCCGCCCGGTGCCTGTGCCTCCTCCTCCTCCGCCGCGGCCGCCTCATGCCAGGCTCCTCCCAGGTCACCCATACCTGCCAAGCCAGCCACGCAAGCGCGCGCCGCGAAGGGGGAAGCGAGGAAGGGGGGAGAGGGAAAAGGGAGAGGAGT

Coding Potentia
Explanation CPC Score
noncoding -1.09825
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0176400.1 2 26476824 G T
Osa02LNT0176400.1 2 26476971 A G
Osa02LNT0176400.1 2 26477432 C T
Osa02LNT0176400.1 2 26478908 C G
Osa02LNT0176400.1 2 26478966 C T
Osa02LNT0176400.1 2 26479148 G A
Osa02LNT0176400.1 2 26480395 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0176400.1 osa-miR1440b Cleavage 4.5 16.45 1 21
Osa02LNT0176400.1 osa-miR529a Cleavage 4.5 24.001 1 20
Osa02LNT0176400.1 osa-miR1854-3p Cleavage 5.0 10.756 1 22
Osa02LNT0176400.1 osa-miR1860-5p Translation 5.0 15.012 1 21
Osa02LNT0176400.1 osa-miR1860-3p Translation 5.0 16.038 1 22
Osa02LNT0176400.1 osa-miR1861d Cleavage 3.5 17.448 1 22
Osa02LNT0176400.1 osa-miR1861h Cleavage 4.5 17.448 1 22
Osa02LNT0176400.1 osa-miR1861j Cleavage 4.5 17.448 1 22
Osa02LNT0176400.1 osa-miR2868 Translation 5.0 24.947 1 20
Osa02LNT0176400.1 osa-miR5513 Cleavage 4.0 16.663 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0176400.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
Osa02LNT0176400.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0176400.1 2 T2-2tiller Morphological trait Culm/leaf C424 C747
Osa02LNT0176400.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0176400.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0176400.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0176400.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0176400.1 2 Hbd2 Physiological trait Lethality nan nan
Osa02LNT0176400.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus