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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0176700.1

GGGACACAGACAAACCAATCCTTTACAACAGACTAACAGGGTCAAATGATACAGAAATCATCGATGTACAATTTCGTGTGAATTTAAGTTAGATAGCTTGGAAATCATGAGCTGTCCTACAAAACATGCACACACGGCTTGCAGAATCTTGCATCACCACACTTTGAAATCCCACGGCTCAAAACTGTGTTCAAAAGCACCAGGAAATTTAATGAGATAAGACTGAAGGGAAGCTTAAATATTGAGATTTACTATGATAAAATCATGATTCCAACACAGGCAATTAAACTTCTGAGCCTGACAAACTAGGATTGGCATCAATGTTGGCTAAACTAAGATGAATAGAGGTGCTCCTGCGCATAGCTAAGAGACCACAAAACAACGAAATGTAAAGTCGACGGATTGTTGTGCTCACTTGATACGAGCAATGGCCACCACGATGAAGATGAAAACTGAGAGCATGAATGACACCTTCACTGCATCAGTGTAAAGGTCGGGCTTCGCTTCATCATCATCAGAGTGGAAAAGCATGTTCACAATCTTCATTATATTATTCATGAATTCCATTATTTTTGCTTGGGTGTTGCCCAGAATCCACTTAAGCACTCCAGCAGGACCACCAGGGTTTCCCTTTCTACCTGCTGCTTCTTTGTCATCCTGGAAAGATCTCCTGAATTCTTGCACTGCCTCGTTGTTCATAACAGCATCCCATACAGCCCTGTCGCATGACAAGGACATGACCATTTTCTGAACATTAGGATCTTTTTGCAATAAACGGAAGGCATCCAAAACATTTCTATGTTCCCTTGTCAGAAGAGCAGTTGAGTTGAGAGCATAGGCAGCAGGTTCAATCCAGTCATCTGATCCTGATGAATTGCCAGATGACGAATGTACTGAGGTGGACAATGCTGATTGCTCCTCAGTTTCATAAGAATGCGCACGAAAAGGATCACCAAATACCTCCTCGATGCTGGTGAAGGCTGCGCGGACCTCGTCGCCGGTGGGCGGCGACCAGAACACCACCCTGTACTCCTCCTCCTCCTCCGCAACAGGCACGGGGGCCCCATGAACCGCCTCCTCGGCCCCGGCGACGACCTCCTCCCACTCCTCCTCCCCCTCGCGGCGCATCGTGCGGGACTCCCAGCACGCGGCCGCGGCGATGGCGGAGGGCGGGGGCGGCGAGGTGGCGCGCAGGAGGCGGCCGCCGGAGCGGGTGCGCGGGCGGCCACCGGATGAGGAGGAGGCGGCGACGGGGGACGTGGCGGAGGTCGAGGCGCCCCCTCCGCCGCCGCCGCTGCCGAGCGCCGACGAGGAGCGCACGGCGCGGGTGGCGACGCGGAGGAGGTGCCTCCCGGGCGGGTTCCGCATGGCGGCGGCCGGCGAGGCGAAGCTTATCGTCGAGGCCGCCTCGGCTCGGCGCTAATCCAATCTGCTCTTCTT

Coding Potentia
Explanation CPC Score
noncoding -1.02591
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0176700.1 2 26574314 A T
Osa02LNT0176700.1 2 26575506 C T
Osa02LNT0176700.1 2 26576068 A C
Osa02LNT0176700.1 2 26576629 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0176700.1 osa-miR5525 Cleavage 4.5 21.854 1 22
Osa02LNT0176700.1 osa-miR394 Translation 5.0 21.872 1 20
Osa02LNT0176700.1 osa-miR160f-3p Translation 4.0 22.62 1 21
Osa02LNT0176700.1 osa-miR1423-3p Cleavage 5.0 16.291 1 21
Osa02LNT0176700.1 osa-miR1429-3p Translation 5.0 14.723 1 21
Osa02LNT0176700.1 osa-miR2096-3p Translation 4.5 18.129 1 21
Osa02LNT0176700.1 osa-miR5489 Translation 5.0 17.065 1 21
Osa02LNT0176700.1 osa-miR5519 Cleavage 4.5 15.452 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0176700.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0176700.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0176700.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0176700.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0176700.1 2 Hbd2 Physiological trait Lethality nan nan
Osa02LNT0176700.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
Osa02LNT0176700.1 2 T2-2tiller Morphological trait Culm/leaf C424 C747
Osa02LNT0176700.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0176700.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus