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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0015100.2

AAGAAAGAATAAGTATCATGAATATCATTATATCAGTCAGATTAATTAGTATTGTCATAACAGAAGCTGACTCAGAGCACAGAGCAGCAATGCCAATTAGTAAACACTTGTAGTTTGGAATCTATGGAGTGCTAAAAGACCACGACCACAACAACTCAACATAATTTACAGCAGGATGACACCAAAAGGCCAAGGCAGTGATGGCAGCTACGGCACTCATTCTGTAACCCCCCTAGCTTCACCATGGATCTCCAATCTCGTTGTTATTCCCGTGTTGTTTGGAGCTGAAGAAGAACTCCGAGGGCTGGTAGCCGTCTCATTCTTCTTGTAGAACTGGATGGAGAACAGGCTGCCATGTGATCGGCCTGATGATATAGGTGATCCATGAAAGATAATGCCCGCCCCATACTTTGAGAAAACCCCTTGCCAAAGTATGACGAGGCAGAAGATAATGGTAATAATCAAAGCTACCAGGTTGCCAATTGAGGAAGCTGGTTTGGTGTTCTTCATCTTCTTCAAAGCCTTCATCCGTTCAATCCTTGCCCTTTTTAAACTTGCGAGCTCAGATAGTTCACTAATGAGCTTCTGGTCAGCAGCATCTAATGGTGAAGCAGAAGGTGGTCGCGGCGGTCGTGGTGGCTTTTTCGACCGCTTCTTCTTCTCCTTCTCCCCCATCGACTTATCCAAAAGCCCAACCTTCATCTCGCCATCGGACGTCCTATCTTCTCCGCTTTTCACGGCGAAATCTTGAGAGCGTGACGAGCAGCAAGGAATGTGGTGATCATCCTTCATAGCTATAAGATCATTCCATGGAGTTTTCGCCTGGCTAGATATCATATTCACATCCGTCCCATTATCGCCCCCCTCTCTCATTAGCAAGCAATTCCCTTTCTCCAGATCAACCAGCACATCCCGGCCATGCACTTCCTTCGACTCCATGAAACAAACGAACCAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACGCAGCTCCCCTCCTTCCAAACTAGTAGAATTCAAGAATCAAATACTCTCTCTCTCTCTCTCTCTCTTCTTCAAGAATCAAATACTCCCTCCCTTCAGGCAAGGGGTCAGTTGAACCCCCAAACTTTCTGGGGAACACATAAACTGCTACAAGCTTCCAGATCGGCGGCGGAAGCAGCAGCAGCAGCAGGGACAGAGACGGCGGCACCACCGCAGCTCGCGGGACGGAGACCGGCGCTGCCGGCAAGCGGGCGAAGGAGACGGGAGCCGAGGAGGGGAAGGGGAGATCGATCCTCGACCAGGGGCGGCGCGAGGCGGCCTTGCGTCGTGCCCGCGGAGGCGGAGGAAGGAGAAGGAGGGATCGATGGGAGCGAAATGGGGAACCGATCGTCCGTCGTTTAGGGGAAGAAGAAGACAGAGGAAGGGACAAGGGCAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.735578
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0015100.2 1 10982157 T C
Osa01LNT0015100.2 1 10982738 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0015100.2 osa-miR159a.1 Translation 4.5 3.784 1 21
Osa01LNT0015100.2 osa-miR159b Translation 4.5 3.784 1 21
Osa01LNT0015100.2 osa-miR443 Translation 4.5 13.431 1 22
Osa01LNT0015100.2 osa-miR1850.3 Cleavage 5.0 15.071 1 22
Osa01LNT0015100.2 osa-miR1855 Cleavage 5.0 15.891 1 21
Osa01LNT0015100.2 osa-miR1857-5p Cleavage 5.0 18.245 1 21
Osa01LNT0015100.2 osa-miR1877 Translation 4.5 16.444 1 24
Osa01LNT0015100.2 osa-miR5501 Translation 3.5 19.414 1 21
Osa01LNT0015100.2 osa-miR156k Cleavage 5.0 4.943 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0015100.2 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0015100.2 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0015100.2 1 nan Morphological trait Root RM23 RM306
Osa01LNT0015100.2 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
Osa01LNT0015100.2 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0015100.2 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0015100.2 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus