© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa02LNT0177500.1
TTAACGATCAGAATCTCTGTATAATTTCCAGAGTAATAGATACAGTGAATGGATTACCTGAGTACAGCAACAACGCTTTCACTATGCAGGCTGCAGCTGACTAGTTGCAAAAGCTCGCAGCAAGGGGAAGTACTGAGAAAAAGAATGGGTATTGAATGGTTCAATTGCCTCTACCTTTGCAAAATGTGGACTTCTAGTTGAGTTTCCTCCTGTACAATGGCCTCGAAACCCATAGATTGTCCAAAGGAAAACGAATGTAGATACCAGAGTATACAGGTGAAGAACTACTGTTTTGGGTCCTTGGCTATCTAGACCCTCTGTAATATACAATTGCATCAACGACGTGTAACTGGTTAACACATAACAGGCATGGTAATATGGAAGTCAACGCCTGTTCCTGGTGGGGGCATAGCTCACCTGTCCATTCAGAATGCACTGTCAGCAATAGACTATGACTAAGATAGATATCTTCACTGTCCCAAAAACGAAGGAAAAAAAGAGGAAGAGTTGAAGATTGAATGGCGATATAGAGCTCTCCAAAGCCAAGGATATGTAGTTGGCGGTCCCCAAATGACCCCAGTAAATAAGCGGATTGGATTCACATATCTAAGTCCATGTTTCGGAATTTTACTACAACAAAGGAATCAATGTTTGGCAAGTAAATATAGTACCACACAATAATGGTAGCAAGTCAAATTTGGCACCTCAAAGATTCTGTTATTTAAAGATACCAGGCAAAAAACTACTGCACTTGATGATAGTACGACACTCAATCACTCATTAAGCCCATGTACTATATATATCCAGTGAAGGTGTAAAAGCTGTTAATGATGTAGATAACATAGAGCAATTCTTTCAAGTCTTAGAGTTAGAATAAAAGGCTATTCTTTTTCTAAAAATGTATAAATAGAAATGCGAGAATTTGCAGAAAACTATGAGAAGGGATGTACCTTTGTTGAGACGGTCAGCTTCTGAAATAATTAATGAAATTATTCGTGTACTATGATACAGTGCCAGGCTTGCAGTAAATAGATGGGCAAACTGGCTCAGCAGCTCTCATCAAGCTCCAACTCAATGCCTATCCAGCACACCTTTGGGTGAAATCAATGACCATGGTTGCACCCAAGGTGTGGTGGACCAGATCTCAAATCCAGTGGAGGCTTAAGTTTTACCCGATCCTCAAAGCCCTTCTGTGAAGCATGCTCAGAAGGCAGTGGCTTATCATGCAAATTCCACACGCTCACATGTCCCATCCTTCCAAATTGAGGGCTCAGAATGTCAGCTTCAGGGACTGCCCTCTCCTGAAAACCTAGCGAGGGTTGTTTCACTCTAACAAAACGACCAAGGACCGGATCTGGAGGCTGGTTTGGCAAGGGCTCATCAAGACATCTCGATGTAATTGTGAAACCCTCATTATTGTAAGCTAGGTGTCTTGCATGGTTAAAAGGAATAGCTCCATTACCACCAGTCAGAGGAGTGGAAGCACCTGAAGTAGTTCTTGGGCTCGAAATCGGAGAGGGTGACATTATACCATTTTGATGTTGTGGAGATCTTGACCTCAGATGAGGGCTCCCACATGGAGAAACAGGGCAAGATATATAGCTTCGTACATGAATATCACTGCAAGCACCGATGATTAGAGTACATACATTTCCATGCAGATATACATTCACTGAACTGTTTTTTTTTTAAAAAAAACGAGGAACTGTATTTCTTATAGGAGTACAGGACTGAGTTATCGAAAATAAATGACAGCAGGGTACAGAACAAGGGTAAAATGTGAAAAATATTACAATAGCATTAAACACTGCTTGAATTTTACAGTGGGAGCATGTTGCAGCTCAGATGAATTAAGCAGGGACATCAACAAAACATAAAAGCACATTTGGGCAATTATTCATACTTGCATGTTGAAAAAAGGACATTAGTAAGATTTCTAGTAGGGTTCACTTAGTGTCCTCATATATAAAAAATTCATACAAAGGTCATTTATTTTGTATTCATTTGAATGTCATTATTTAGGGGTAACTGCCAAAATAAAAGGAGGAGGAGATAGTTCAGTAATGTGCAGCTAAAATTTCCTACTTTGAAATGTTAGCTAATTTACTTTTCGTCATACCAAAGCATAAGGATTATGATATGAGAGGTTTGGTTGCGGTTCTAATTTAATTTTTTCAGCAGAGATTTATAAGTTAGCTACTGCTCCTCTAGAATATTTAGTACACACACTCCAAAGCAATATTCTTATGAATTAGCAGGTAGATTCAAATATTGAATGATTCACCTGTGCACAGAAGAAAATTTAGCAGCTCTTCTCTGGTAAATGGATTGCCCTTCCAAACCCAAAGAAGACATATTTCTGGCATGCCCGACCACCTTCAGATCTGGTTTGCAGGATGTAGTAGACAACTGTAGCAATGGATCCGACAGTGATTTTTCAAGTGGAGATGCATTTCGTATAAATGAATGCTGCAAAAGATCCACTGCTGTTGGACGGCTGGATGGATTGCGCTGCAGGCACTGTCTTATAAAGTCTCTGCCCTCTTCTGAGAGGTGATCTGGTATTGGTGGAAGCTCCTTACTGTTTCCTATCTTAAACACTGCAGCAATCCCTTCATATTGGCTCCATGGTGGTTTTGAGGTAGCCATCTCTAAAACCGTGCATCCTAAGCTCCATATGTCAACAGCAAGATTACATCCATTAGAATTTTTTATAACCTCAGGAGCCATCCAGTACGGGCTACCCTTAAATGAAAAGGCACACTGCTGCCCATTGATATGTTTTGCCATTCCGAAGTCAGCAAGCTTTACACGACCATTAGGATCTACCAGTATGTTTGCACCTTTAATGTCCCTGTGAACCGTATTTTTTGCATGCAGATAAGCCAAGCCTAAAAGTATTTGCTTGGTATAACTGCGGATAGCAGGTTCACCAAATTGCCCATACTCCTGGAGTAGTTTATGGATGGATCCACCAGAAACATACTCCAGGTATATATAAAGTTTATCATCAACCATTTCAGATCCATAGTATCGTACAATATTTGGATGTTGCAGACGATTCAGAAGTAATATTTCCTGACACAACTGCTTTGCACTTTCTTTTGATTTAGGATCGTCTGAGAAAAGGGTGACCTCCTTCATTGCACACATTTCACCTTTATCACTGTTAAAGCCAATGTATACATGGCCAAATGTCCCACGGCCGACAAGCTTTCCCTTCTTCCACCGTGATCCAGGACTAGTTGGATTTTCTACTCTACCAGGACTATGTGAGATAGGACTAGTTGGGGTGGAATTGTTTGGCAAAAAGGTGGAATTGTTACATATGCTTAGTGGTGGAAGGGGCAATCTGTGGGTTTGCTTCCTCTTCCCTTCATCAAGTCGCCTTGTTGGAGATTCAGGTGCCATCCCACCAGCCCTTGGATGCAATGGAGAGACACTTCCACTATGTACCCTTGAACTTGGACCAGGGCTTGTCATTCTTGGGCTGGGAATTGGTGAACACTCTGGACTACCTCGGCTAGGTTGCCAAAAGAGCTGGGCTAGCATATCACCTCCCACTGAATTATGCCCAGATGTTTGCCCTGAACCAGGACTGGAGCACTGAGCAGACCCAACAAAAGTTACATCTGTATGAGGCTTAACTGCCCAAAATGCTGAACTTGGAATCTGATCAGGGCATAATATTCTTGGGCTTCGAGAAGGGCTTGACATCACACTATTGGGAGCACTGTCCAGAACAACCTTTCGTGAATTTTGTAAATTTGACTGGTAACTGTCAGCAACAACAGTACCTCTGGGACTTGTAGATAGAATTTGATTACTCAAGAAAGCATTGGTTGGCATCGTCACTTCCTTAGTGCCCTTTCTGGTGATGGCACTAGAACACTCCTTATGCACAACACTTGAATTACCGGTTGTAGCAACTTTAGCCACATTGTCGGTGTCATTTGCCACAGGTCCCTGAAGTCGCAAATCTCCAGGATCATCGCTATCTATAGAACCATGGCTGGAGATAGAAGCAGTTGATAATTCTGCAACAGGTTCGGTAGTTTCAGGTCTTTCTTTAACCCAATTTGTGGTAGGGAGCGGTAGTTGTTGTCCTTTGCCACGCTTTTCCAAAACGACCTTTGATTCGGTAATATCAGAAGCAGTACGTGCCACCATAGCACGGGATCTAGGAAGGGGAAGTGGTTGTGCATGTGCTCTGGCTGCAGCAAAGCTTTGACAACGAGAAACCTCTTTTGAAGGGGATGCAGAGCGTGATTGGGCAGTAGACCAGCAACCTTTCTCAGCAGTTGGATCTTTACTATGTCTACGATTCCCCCGTGATTTTGTTCTCCCCTTTTGCTCATTTGGACTTAATAACCGATGAAATGTGTCAATGAGGTTTTCTTTGGCAGTCTTCTTTACTTCTTTTGATGAAGACTTCCCCCACCATGGTGGCATATTGAATATGAAACAAGTTGGACAGGATTTCACTGAGCTAATCACACATTGAAATTTTGAAATCACGCAGGTATCCTTAGTTTCTGTAGTGACAAAAAAAAGTCCTCAACTCACTGGAATGCTTCAATTCGATACTTCGATTCGAACCGAGATGCTCGCCGGCCGGCCGCACAGGGGAGAATACTAGTGCGGTAGGGGGTCGGGGAAGGGGAGCAGCAGCCCGTCCGCACTGCGCCTCCGGCCCTGCTCGCCGGCCGCGCGCGCGACGGAGGCGAGTCGGTGTCGCGGAGGAGGAGAACGCTGGCCGAGCCTCCGCCCGTGCGTCCGCCGGAAACGGTTTTTTTTTTTCAGACGAACAGATAAGATGAGCAGAGGAGAGGAACGGAGAGAGACGGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa02LNT0177500.1 | 2 | 27049138 | A | G |
| Osa02LNT0177500.1 | 2 | 27049296 | C | T |
| Osa02LNT0177500.1 | 2 | 27049326 | C | G |
| Osa02LNT0177500.1 | 2 | 27049514 | C | G |
| Osa02LNT0177500.1 | 2 | 27050609 | A | T |
| Osa02LNT0177500.1 | 2 | 27052270 | C | A |
| Osa02LNT0177500.1 | 2 | 27054334 | T | A |
| Osa02LNT0177500.1 | 2 | 27054858 | T | C |
| Osa02LNT0177500.1 | 2 | 27055007 | C | T |
| Osa02LNT0177500.1 | 2 | 27055344 | A | G |
| Osa02LNT0177500.1 | 2 | 27057047 | A | G |
| Osa02LNT0177500.1 | 2 | 27057094 | A | G |
| Osa02LNT0177500.1 | 2 | 27057184 | C | A |
| Osa02LNT0177500.1 | 2 | 27057200 | A | T |
| Osa02LNT0177500.1 | 2 | 27059834 | A | C |
| Osa02LNT0177500.1 | 2 | 27061221 | A | C |
| Osa02LNT0177500.1 | 2 | 27050312 | A | G |
| Osa02LNT0177500.1 | 2 | 27052416 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa02LNT0177500.1 | osa-miR5079b | Cleavage | 4.5 | 12.614 | 1 | 22 |
| Osa02LNT0177500.1 | osa-miR162a | Translation | 4.5 | 20.602 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR399d | Cleavage | 5.0 | 20.96 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR399h | Translation | 5.0 | 12.161 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR399i | Cleavage | 4.5 | 20.96 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR399j | Cleavage | 5.0 | 20.96 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR159d | Cleavage | 4.5 | 17.155 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR162b | Translation | 4.5 | 20.602 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR166k-3p | Translation | 5.0 | 18.29 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR166l-3p | Translation | 5.0 | 18.29 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR167d-3p | Translation | 4.5 | 19.955 | 1 | 22 |
| Osa02LNT0177500.1 | osa-miR171b | Cleavage | 5.0 | 16.655 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR171c-3p | Cleavage | 5.0 | 16.655 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR171d-3p | Cleavage | 5.0 | 16.655 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR171e-3p | Cleavage | 5.0 | 16.655 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR171f-3p | Cleavage | 5.0 | 16.655 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR393b-3p | Cleavage | 5.0 | 23.393 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR444b.1 | Translation | 4.0 | 13.677 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR444c.1 | Translation | 4.0 | 13.677 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR1850.2 | Translation | 5.0 | 16.917 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR1860-5p | Cleavage | 4.5 | 18.535 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR1862e | Cleavage | 5.0 | 17.698 | 1 | 24 |
| Osa02LNT0177500.1 | osa-miR2867-3p | Translation | 5.0 | 24.934 | 1 | 20 |
| Osa02LNT0177500.1 | osa-miR2875 | Cleavage | 5.0 | 12.913 | 1 | 24 |
| Osa02LNT0177500.1 | osa-miR2928 | Translation | 5.0 | 18.639 | 1 | 20 |
| Osa02LNT0177500.1 | osa-miR3981-3p | Translation | 4.5 | 20.562 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR5079a | Cleavage | 4.5 | 12.614 | 1 | 22 |
| Osa02LNT0177500.1 | osa-miR5517 | Translation | 4.5 | 20.146 | 1 | 21 |
| Osa02LNT0177500.1 | osa-miR159d | Translation | 5.0 | 15.843 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa02LNT0177500.1 | 2 | qCHR-2 | Others | Others | RM263 | RG520 |
| Osa02LNT0177500.1 | 2 | nan | Physiological trait | Eating quality | C621 | C370 |
| Osa02LNT0177500.1 | 2 | Hbd2 | Physiological trait | Lethality | nan | nan |
| Osa02LNT0177500.1 | 2 | nan | Physiological trait | Eating quality | nan | nan |
| Osa02LNT0177500.1 | 2 | nan | Physiological trait | Eating quality | nan | nan |
| Osa02LNT0177500.1 | 2 | oa2.1 | Resistance or Tolerance | Drought tolerance | RM263 | R3393 |
| Osa02LNT0177500.1 | 2 | qSDW2 | Resistance or Tolerance | Cold tolerance | RM263 | RM6 |
| Osa02LNT0177500.1 | 2 | T2-2tiller | Morphological trait | Culm/leaf | C424 | C747 |
| Osa02LNT0177500.1 | 2 | nan | Physiological trait | Germination/dormancy | RM263 | RM221 |
| Osa02LNT0177500.1 | 2 | qPH-2 | Morphological trait | Dwarf | RG324 | RG83 |
| Osa02LNT0177500.1 | 2 | qGRH-2 | Resistance or Tolerance | Insect resistance | C621 | C601 |
| Osa02LNT0177500.1 | 2 | qSB-2 | Resistance or Tolerance | Sheath blight resistance | G45 | RZ273 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)