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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0177700.1

CGCTGTCCTATTGAACCATGGCACCAGCAACTCTGACGTCCCAAAAAGGATCATTTATGGGATAAGTTTTTCTAGGAGTTTATTTGTAAAATTAGTTTTTGAAAAGGACCAAATTGTAAAAAATCCAATGTGGTTGGTTGCATGCGCCGGTGCATTAGGGTTTTCCGCCTCTAGTCAAATAGATCCTCCAGCGTAAGCTTTTTTGGCATCCAATCTCAAGTTGTTCCTACTTCAATTCTCTATTCTCTTAAGGAACAAATTGGTATAAGTACGATAATGTATGGATAGGAAGGAGTGTAGCAGGCTAGCGGCAATATCTTTCTTAATATTTGACAATTTTAGCTTTCTGATTTATGGCATATTCAGATTGTAGCCAAAATGAACCTTACAAGTTTTGGCAATACCAAAATTATAGCAAGACGGCAATATTGCCAAAATTTTGGCAGGATTTCTTATGTATTGGTCAAATTTGGCAACAAACTAAACGTATATATTTTTTTTGCAACTTTGACAAATAATGGTATGGTTGAAAATGACATCAAAGTGAACATGCCCTTAAACTGTATAGATTTTCTCTCGTCCATCGTTTTGTACCGCACGGTACCAGTACCATGAGGTACCAGTCTTCATCCGGCCGTTGATTGCTGAGGGGTACGATGGGGATGGGAGTATGCGCGAGGTTCGCTCCGGTGTGGGGTCCCAACGTTTCTAGCTACGTGCGGCTTCGTTTAGGTCATCCCCATCGCATCTCACGATACCGTCGCCCATCGCATCTCACGCTAGCGCCGCCGCACGGGTGTTCATCTGAGGAGGAGGGCGAGCGCTTCTGTAACCGTCGCCGTACGGGTGGTGACATCCTGGCAGCGCCGCGGCCGCAGG

Coding Potentia
Explanation CPC Score
noncoding -1.13261
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0177700.1 2 27112955 G A
Osa02LNT0177700.1 2 27113433 A G
Osa02LNT0177700.1 2 27113624 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0177700.1 osa-miR5817 Translation 4.5 12.997 1 24
Osa02LNT0177700.1 osa-miR5827 Cleavage 4.5 10.286 1 21
Osa02LNT0177700.1 osa-miR171f-5p Cleavage 5.0 16.02 1 21
Osa02LNT0177700.1 osa-miR444b.1 Translation 4.0 18.415 1 21
Osa02LNT0177700.1 osa-miR444c.1 Translation 4.0 18.415 1 21
Osa02LNT0177700.1 osa-miR1866-5p Cleavage 4.5 18.709 1 24
Osa02LNT0177700.1 osa-miR2093-3p Translation 5.0 20.685 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0177700.1 2 oa2.1 Resistance or Tolerance Drought tolerance RM263 R3393
Osa02LNT0177700.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0177700.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0177700.1 2 nan Physiological trait Germination/dormancy RM263 RM221
Osa02LNT0177700.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0177700.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0177700.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0177700.1 2 Hbd2 Physiological trait Lethality nan nan
Osa02LNT0177700.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0177700.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0177700.1 2 T2-2tiller Morphological trait Culm/leaf C424 C747
Osa02LNT0177700.1 2 qSDW2 Resistance or Tolerance Cold tolerance RM263 RM6
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus