>Osa02LNT0178200.1

GTCCATGGCTAGCTTCCAATTTTTACTATTCAAAGCATCATTCAAAGTATCAGGTTCTGACTCAGCAGTAATTAAATTTGCCCAACGAACTGTACCGTCTGTGTAAACCTTGGGTTTACGAATTCCCTGTTGTAGACGAGTGGCTGGTCGTTGAGGCTGAGTCAGGGCAGCTTCGCTGGATGTGGTAGAGTTGTTCGCCGTAGAGTTGGTCGCCATGGACGATCTTGACGACGAGCTGTCCGAGAGAGGCTCCGACGAGCCCCCGTCGATCGGAACAGCCAAGGAGTCATCGCCGCGTGGAGGAGACGCCGGCTCGGGCGCACTGTCGGAGACACGCGACGAGGAATGGCTGGTGGATGGCGATCGGCTGAGAGAAGAGCCGGCTGCAGCGCCTATATCCCCAGGATGATGCGCCGCAGTTGCGTCAGAAGTCGCAGCGTCGTCAGGGGCTGCGTGAGTGTTAGGAGCCGCGGAGTGCCCGGGCCGCCCGCCGAGCAGAAAACCATGGGTGTTTTGCTCCAAAATTTGCCCTGTTCGCCCAGAAATTTCAGCAGCAGCATCTGCACTCGTAGCAACATCAACTGGAGACTCATGAGCAGGGTTAGTAGAAGAATTAATCACATATTGGTCAACATGTTCGTCCCGAGAAGGATTCAAAAGATGTTCTGGGAGGAGAAGAATTTCAGCCCGGAGACAATGACCAGCATTTGGATGAAGGTCAGAAAATGGGTAGATATGTTCATCAAAAACCACATCACGAGAAATATAAACCCGACCACTTAAACCCTTTGTGCATTACACTGTAACCAAGGAAAACACACCGTTTCAAGCGGAATTGGAGTTTGTGAGAATTGTAAGGGCGTAAATTTGGCCAGCACGCGCAGCCAAAGGTGCGGAGGGAGGTGTAATCAGGTTTGATATGAAAGAGCATTTCTAGAGGTGTGGAGCCTTGGAGAACAGGAGTGGGAAGCCGATTAATAAGGTAAGTACCTGTAAGGAATGCCTCATCCCAAAACTTGAGAGGCATCTGAGCATAGGCTAGAAGGGATAGCCCAACTTCAACAATATGATGGTGCTTACGTTCGGCAGACCCGTTTTGTTGATGTGCATATGGACATGACACACGGTGAGAAATACCGATGCGTTGAAAAAAGGAATTGAGTTTGTGATATTCACCACCCAATCAGTTTGCATAGCTAATATCTTGCGATCAAAGAGTCGTTCTACAGGATTCTGAAAATTATGGAAACATTGAAACACATCGGATTTATGTTTAAGGAGATATATCCAAGAAAATTTGCTGAAATCATCCACAAAACTCACATAATAATTATTCTTCCCAACCGAGGTTGGTGCAGGACCCCAAACATCTGAATGAATAAGCTCTAAAGGAGCACTAGAACGACTCAAAGACTTAGAATAAGGAAGTTGATGACTCTTCCCTTTCTGACAAGCATCACAAACCGAATGCTTGTTTGACTCACTAACACAAGGTAAATTATTATGACTCAAGACTTGTTGAACAATGACTGAGGACGGGTGGCCTAGGCGACAATGCCACTGCGAAGGAGAAAGCTTGATAGCTGCAAAAACTTGTTTATTTGGGAATGATTTCAGAGGATAAAGGCCTCGCTCACATCTGCCTTGGTGAAGTAGTTTCCTCGTTACCTGATCCTGAACCACTGGCAGTATGAACTTGATCACCTCCATTGTACTTCTCCCGCACCGTCAGCTTGTCAAGATCGCTGGTGATGTGGTCCGTCGCCCCGGTGTCAATATACCAATTGGTACCAACACCGTAGGAGGAGGTAGCAGCAGCAGCACTCTTCTCTTCGCCAGTGAAGGAAGCATCAAACCTCTTGTAGCACTTGACCACCGTATGGCCCAATTTGTCACACAGCTGACACTTGGGGTGATCTCCTCCTTGGTTGTTGGTGAAGCCACCACGGCCGCGGCCTTGGCCGCCGCGACCACGGTTCAGATTTTGGCCCTGGTTTGGCTGACCATGGCCGCGACCTCCTCCATTGCCGCCGCGAGAAGCAGAGTTGGTGGACGACTGAATGCCACCCTGTCGAAGTTCCAATCGCTGCTCAAAAGTAACAAGCTGTGAAAACAACTCACCGACTGAGATTGGCTCAGAACGTTGGGCGACTGCAGAGACAACCGGGTCAAAATCATCATCGAGCCCAGCCAGGATGTCGGAGACGATGTCGTCGTCGTCGAGCTTCTTTCCTGCCGAGGCCATGTCATCAGCAAGACCCCGCATCTTGGCCACGTACTCGGCAACCTTCAGATTGCCCTTCTTCGTGGCCGTCAGAGCCATGCGTGTGTTCATCACACGCGCACGGGAGTGAGATGCAAACATCCCACTTATGGCATCCCAAACCCCAACAGCAGTGGGAATTGAGACCACCTGGATGAGGACATCACGTGAGAGGGAGAGCAACAGGTAGCTGAGAACCTGCTGCTCTTGCGCCACCCACTCGGTATGCGCGGGATTGGTGACCCGCACATCCTTGTCGTCCTTCTTGGTGATGATGGTGGCCGGCGGCTCCTCCTTTGTGCCGTCGATGTATCCAGCCATCTGAGCTCCCCTGAGCGCAGCAAGAACTTGCGCCTTTCAGAGAGGATAGTTGCTGCGGGAGAGTTTCTCTGTGACCGCGTGCGCGAGAGAAGGAGCAGCGCCACCGGCTAGCGAGGATGAAGACGACGCTATAATCACGACGTCGAGGAAGCAG

Explanation	CPC Score
noncoding (weak)	-0.725339

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0178200.1	2	27298023	A	G
Osa02LNT0178200.1	2	27297255	C	T
Osa02LNT0178200.1	2	27297863	G	A
Osa02LNT0178200.1	2	27298660	A	G
Osa02LNT0178200.1	2	27298762	C	T
Osa02LNT0178200.1	2	27299372	T	A
Osa02LNT0178200.1	2	27299611	A	G
Osa02LNT0178200.1	2	27299690	A	G
Osa02LNT0178200.1	2	27297196	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0178200.1	osa-miR2866	Cleavage	5.0	19.848	1	20
Osa02LNT0178200.1	osa-miR5144-5p	Cleavage	4.5	14.575	1	21
Osa02LNT0178200.1	osa-miR5144-5p	Translation	4.5	12.78	1	21
Osa02LNT0178200.1	osa-miR5496	Cleavage	4.5	19.159	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0178200.1	2	oa2.1	Resistance or Tolerance	Drought tolerance	RM263	R3393
Osa02LNT0178200.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0178200.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0178200.1	2	nan	Physiological trait	Germination/dormancy	RM263	RM221
Osa02LNT0178200.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0178200.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0178200.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0178200.1	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0178200.1	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0178200.1	2	T2-2tiller	Morphological trait	Culm/leaf	C424	C747
Osa02LNT0178200.1	2	qSDW2	Resistance or Tolerance	Cold tolerance	RM263	RM6

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus