© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa02LNT0178400.1
GAATCCTCAACTTCTAGTGTTGATAATAGATAAACAACCAGATCATGGTCGATAGTTCACAGCACCACAATCATTAACGTACACACACTATAGGTCGTTCCGTCTTAGATAACAGGGGGCGACTCAAACCGTCAGACGTTTTCCCCCATACACAAATATTCCCAAACTTAGCAGTAGAACATGACACGTTTGACATTTTCCTTCAGATCAGGAAGCGGCCTTACAGCAACATTCCCAGCAGGCTTAGTGCTGCGTGCACCAGGAAGGGGGCCACCGCCACGGGTATGGGCACCGCTCGCCATCGACCCACTATCTGAAGTATCCGGCTCCATGTAAAATCGAGCTCGAAATGCCGCGAGATGGGCATAATATGCAGGAGGAACGATTGATACGGAACGGGTGCACCTTGCATAGGTGTAGCACAAGTTGTTTGTCAGAGTTTGCAAACCATCAGCAGTGAACTTGTTCTCATCCCACAGAACATGATAATGTGCAGGGCGACTTGTTCCCTGAATGCCCGCATGGCTACACAGGTAGAAATCAAACTCAGTAGGATGGCATATCTTTGAATCAACCACGGTGCCTGGTAGTATATTTCCACTTCTGTCAACAGTGCGCTGGTCCTTGTGGTTATTAGCAAACAGCCTTGTGTGATGACGCTTCTGGACCACCACAAAGGTAACGGGTGGCTGATAATCGGCTTCCAAAGATGCACATGCCTTTCTAATGGCATCAAGCTCATAAAACAGAACCTGATAAAACTGTCCTTCACTGACACCATCCCTGTAAAATATAATCCTCTGGGGTTTCTGTCCAGTTGCCCTCTTGAAAGAAATGAGAAGCTCTCTGATCATTCCACCACTTACAGTTCCTCTTTGAGGATCTTTCCATACTTTAAAAAGATCCTGTATCAATTCCTGACGATGGGCCTGTGCACTCACTAATCCGGCATATTTGGTGACCTCAGGCCAGTCTTGAGAAGCAACAACAGCTGCAATGGAAGGGCTAGAATCTTCTCCAGGATGGGGATGTGTAACATCAGCACCAAAAATGATCGTTGGCCTATCACTCACAAGGGGAATCCTCCTTGTCAAAGCATCAACAAGTACTGTATTTCTTCCTCCCACCTTAACATTGATTTTAAGGGCAACGTTTGCTAAATACTGTTTGCTCATCTTAAAAACATGCTTCGTAAGACAGCATTGCGAGACCAATCCAAGATCAGTCTCACATATCCTTTTGAGATCGCCATAAAGAGAACCATTATTGTCAGGCAATATTGCAATCAGCAGGTCAAGCTCCCCGCCCTGTGGTTTCAGTATATTCATGGCCTCTTGATAGCGTGCCTTGAGCGCTCTTTCCACATGTTCAGGTCTTGCAGTCACTAGAGGAACCACAGGATCAATTGAGAAGTCCATCCCAGATATTTGGCACATAATAGCAAGCTCGCGACAGAAACTCCTAGCAGCATTATCTTGGACATGACGAGAAAAATTGATGCATGTCCAGTTGTTAACTCTACCACCATTGACCATTTTCTTATTCATCATATTCCATTGGCCAATTCTTGGCAAGACATCCTTCTCTCTGCCACTATCGTGGTACTTAAGCCAGGGGGGTGGTAGAACACGAGCTTCAACAGATGCAAGTCGCTCATCGATCCTTATGCCAAACTCCTGTGCATATGGATCCTGATGGTATGCATTGTGATGCACAGTCTGCAAAATGTCCAGCTCACGCTCTTGAGGGCGCTGGCAGGTCACTTTAAGAAGAGCAGTTATCTGCTTCTCATTTAGTCTTTTTGAGTAACGCTGTCCCTCCACAATCTTACAGACCTCCATTGGTAGATAATTTGGCCTTTGTTGATTGCCCACTTGCAAGCAAGGCAAAGTTGTGTGCTTAATGTTAAATCCATATGTCTCCTGGAAGTATTGCACCACCGTCTTCACAGTACCATGATTATCAATGGGAAAAGACAACTCTCGTGTTGCTTGCGAGGTAAGGCCAGAAATGCGATACTTCCTGCGCATATTGCCTCTATGTGTGACCTCAACCTTTACACCCCTTAGGGCCTTCTTGATCTTCACACGATCAGCATCAGATAATGGTCTAACTGAGATGTCTCTGTTCAAAAGCTGTGCAACAAAGTCAATCACAGGTAGAGGCTCAATGAATGCTGTCGATGACATATCAATATTCAGAGAAAGTCCCATCTGCGTGGGTCGTATGCTTTGGTAAAAACCACGCCAACTTTCCAGGCCCTCGCCAAGTTGTTGGCGCCTTCCTAAGTTAGGCGAATAAAATGACCTTGCAACTGGAGAGTACCTTGCAGTAGGCAATTCACGTAGAACAATGTCAAGAACTTGAAGAGCTTCTTGAGGAGCATCCGCTTGCCTTCCAGCTAAAAACATGGCTAAATGGTGGAGATCAGCGCGTGCAGCAAATTTGATCACGACCTTAAATGGTCTCTCACGCCTCTGTGCACCTTGCCCAACAGCAAGGCTCTCTTCCTCATCCTGCAGAATAACGTCAAAGGTCCTAGAAGTAAATGGTAATGGACCAGCTGTGTATAAGCTCTTCCTTCCATCATAGACTGGAAGACGGCCACCCAAATGAGACTGCCTATATTGTGTTACAATTTCTCCAATGACAGCACGATTGACACCACGTGAAGGAACCTCAGGAGTTATAGACACATCATACTGGTGAAGGTCTTTGTCAGGCAATTCAGCAAAGAAATGGTTGGCTTTCACGATGCACCTATCACCAAATGTACCCTTGCCAGGGCGCATTGGAAATCTCACTGATTTGCTCGATGGTGGTGCTGGTTGAATGGCCTGGCTAGTGGGGCTTTGACCCTGGATGGCAAGTTCCTGAAACTGATGTTGGACTTCTTCGCTGCTGGCCTCAACAGGCAGCGAAGATGGGCCAGTTCTTGATGGTGATGGTGCAACCACCGTAGCTTGGTACTGGTCTTGTGAGGCTTGGTGCAGCTCGGGAACTGTTCTTGATGGACTGGCAGGAACTCCATGTCCACCACTGCCACTCCTGTGTTGTGGCATTCCTCCTTGCCGTTGGACACCACGGCCATAGTACTCATGTGCTTGATATTCAACCGGACCACCACCTGGTTGATGTGATGTTGGCCCTCCACGACCCTGGTAACGTCCACCACGTCCCTGGTGTTGTCCACCACCACGACCAGCTTGTTGAGCATATTGAGGATTGGCAGGTTGCCAACCACCACCTCCATGCTGTTGAGCTCTCTCAGGTCGCTGTGAAGGACCCCGTCCAGGAGCTCCAGTGGCTTGTTGAGTTCCAGAACTTTCCCCAGCATTACGGGGTTCAGTTTTTTTCTTTCTCATCATGGCTAAAGCTTACAAATCGAGACGGATGGCCCGACAGGGATTGCTGGGTAGGGGAACGATTAGAGCGCTGGAACCGGTGACTCTCCCCCTTCGTCGGCGCCGGCGCCGGCGCAAGAGCCGGTGCGGACGAGCGCGGGCACGACGCGGCGCGCCGGGCCGATGGAGGAAGACGGGCGGCGGCGGCGGGCGAGCGCCTAGCGGTAGCGGAGCCGAGGAAGGAGGCGGCGGCTGCGGAGGGGGGTCGAGGGCTCGGTGCGGGTGCGGGTGCGCGTGCGCGGCGAAGGGGACTAGGGGTAGGGGAGGCGAGGGGCGAGCGAACCGGGGTGAGGACGAGGGTGACGGGAGAGCGGTTTTGGGCGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa02LNT0178400.1 | 2 | 27330587 | C | G |
| Osa02LNT0178400.1 | 2 | 27334297 | G | C |
| Osa02LNT0178400.1 | 2 | 27334450 | A | G |
| Osa02LNT0178400.1 | 2 | 27334763 | C | T |
| Osa02LNT0178400.1 | 2 | 27334832 | T | C |
| Osa02LNT0178400.1 | 2 | 27335017 | A | C |
| Osa02LNT0178400.1 | 2 | 27336602 | A | G |
| Osa02LNT0178400.1 | 2 | 27337497 | C | G |
| Osa02LNT0178400.1 | 2 | 27337951 | C | T |
| Osa02LNT0178400.1 | 2 | 27338615 | A | G |
| Osa02LNT0178400.1 | 2 | 27331991 | T | C |
| Osa02LNT0178400.1 | 2 | 27331835 | G | T |
| Osa02LNT0178400.1 | 2 | 27335484 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa02LNT0178400.1 | osa-miR5793 | Cleavage | 3.5 | 11.382 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR5796 | Translation | 4.0 | 20.456 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169a | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR168a-3p | Translation | 4.0 | 23.467 | 1 | 24 |
| Osa02LNT0178400.1 | osa-miR169b | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169c | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169e | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169f.1 | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169g | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169h | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169i-5p.1 | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169j | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169k | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169l | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR169m | Cleavage | 5.0 | 21.973 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR444a-5p | Cleavage | 4.5 | 16.313 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR530-5p | Cleavage | 3.5 | 22.916 | 1 | 20 |
| Osa02LNT0178400.1 | osa-miR1440a | Translation | 4.0 | 13.361 | 1 | 20 |
| Osa02LNT0178400.1 | osa-miR1861b | Cleavage | 4.5 | 14.87 | 1 | 22 |
| Osa02LNT0178400.1 | osa-miR1861f | Cleavage | 4.5 | 14.87 | 1 | 22 |
| Osa02LNT0178400.1 | osa-miR1861i | Cleavage | 4.5 | 14.87 | 1 | 22 |
| Osa02LNT0178400.1 | osa-miR1861l | Cleavage | 4.5 | 14.87 | 1 | 22 |
| Osa02LNT0178400.1 | osa-miR1846c-3p | Translation | 3.5 | 11.209 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR5497 | Cleavage | 4.5 | 10.413 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR5497 | Translation | 4.5 | 18.407 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR5517 | Translation | 4.5 | 24.033 | 1 | 21 |
| Osa02LNT0178400.1 | osa-miR6251 | Translation | 5.0 | 21.482 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa02LNT0178400.1 | 2 | nan | Physiological trait | Eating quality | nan | nan |
| Osa02LNT0178400.1 | 2 | nan | Physiological trait | Eating quality | nan | nan |
| Osa02LNT0178400.1 | 2 | qCHR-2 | Others | Others | RM263 | RG520 |
| Osa02LNT0178400.1 | 2 | T2-2tiller | Morphological trait | Culm/leaf | C424 | C747 |
| Osa02LNT0178400.1 | 2 | qPH-2 | Morphological trait | Dwarf | RG324 | RG83 |
| Osa02LNT0178400.1 | 2 | nan | Physiological trait | Germination/dormancy | RM263 | RM221 |
| Osa02LNT0178400.1 | 2 | qSB-2 | Resistance or Tolerance | Sheath blight resistance | G45 | RZ273 |
| Osa02LNT0178400.1 | 2 | qSDW2 | Resistance or Tolerance | Cold tolerance | RM263 | RM6 |
| Osa02LNT0178400.1 | 2 | oa2.1 | Resistance or Tolerance | Drought tolerance | RM263 | R3393 |
| Osa02LNT0178400.1 | 2 | qGRH-2 | Resistance or Tolerance | Insect resistance | C621 | C601 |
| Osa02LNT0178400.1 | 2 | nan | Physiological trait | Eating quality | C621 | C370 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa02LNT0178400.1 | osa-MIR168b | 100.0 | 106 | 1 | 106 | 5.55e-51 | 196 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)