>Osa02LNT0178700.2

ATATTACAAAAAGTGCTTACAGAAAGGGGAAGAATGCCCACTTCAATCTGCTTACAGAAAGGGGAAGGATGCACACTCCAATCTGTTTCAACAAACTAATGGTACAACAATATGGCGAGTAGCTGATTCTCTGGAAAAAAACTGCCATAGCCTCCAAGATGTTGCTCTAAGGGGAAAATCCCCAAAAAATGCTATTTACATTGTATTCCTGCGCCTCTCCATCTGCTATGTGTTAAATTAACACAGGTTAAACTGTTGTCCGTCCAATTGATCTCCCAGTGCCATCAGCACACATGACACTGGTCTATTTTGCATGTGTGCAGCAAGGATGAGTACGCTTCTTACAAAACATTAAACGATCAATACATGGTAAAAATCCAAAAAACAAAATAAGAAAAAAAACTGCATTGTCAGATGCAGAAGCCTCAGCGCGTCTCAATAAAGTTGCTAGCACAACAATCCATTCCTTAAATTTGACAGAACACATGTGAGCAACAAGGAACTCAACATCAAGCCGACTTTGAAGAGTATCCATTTGAAGCTGTCATCAGAATATCAATTATAAATGAGAACAGAGATCCAAGGCAGATAATAATATCAGCGAGATTGTGCTAGTATATTGATTGATCAGGTATTGAGTGATTTACTCAAGTAAGCACCATTCTATTTGTTAAACAAACATCCATAATTACTAAGCTTGCCCAGATTCGTAATCTTATATTATGAGCAGTCAATTCAGAACATTATCAAGCTTTGTAAAAGTACAAACTGCAGGAGAAAACTGTAGAAAACTCGAGAAAAATAATCCAAGACCGCAAAGTAGGTGGGAGCTTCTTTGTGCGCTTGTAGTAGCGGACGAGGCGGTGGATCCTGCTCTCAACAAGAATAAGCCTGAAACTTGAGTCCTTGTCCTTCCTGTTCCTCTCCAAATGCTTCCTAATAGCAACAGCCTTCTTGATCAGGAAGTACAGGTCTTCCAGGATCTTCGGTGCAAGACCTACCCATCAATCAAACAACATAAACCAGCACACGAACGCATGAAGCAATCAATAGAAGTGGGAGTGTCATAGGGTGGGGAGATCTCACCGTGGGCCTTGAGGATGTGAAGAATCTTGCTACTGGCGATGCTCTTGACGAGGGGGATTCCGTGCTGGTGACGGAGCACAACGCCAATCTGCGACGACATCTGACCCATCTTCGCGGCCTTCATGATCATCTCCTCCACATTGGAGGCGGCGTTCTTGAGCAAGCTCGGGGGAATCCTCTTGCACGGCAGCGCCGACGACGAGATACCCTTCCTCGCCGTAGTTTGGCCGGCGGCGGCACCTCGTGTTGAGGAAATCGTGCGTTACCACGGGCTCTTGGCAGTAGCGGCTGCCGGAGGGCGACCGGAGTTGGAATCCAGTAGCCGGCGTGAGGAAGCGCGGTGGCGTTGGCGCCACACCGGCCACGATGCCGCCGGAGAAGGAGGCGGCGTTGACGCGGCCGCCGTGCCGTGCTCCATGCCGGGGAGGCGACGGTGACATCACCACCACTGCACCCCACTCCTTGCCTTCCCTCGCCATCCTTACTTCGCGTGGCCGGCCTCTCCCCGCTAGCTCTGACGGGCGGCAGTGGCGCGGTGCCCGTGTGCGGCCGGATGCGCAGCCGCCACAAGCCCCATTGCCGGCGGGTGGGGTGGGGGGAGAACAAGTGGGGAGGGAGGTGTTGCGGGGAAGGCGGATGATGGTGCCGCACCCGTCGGCCTCCGCCGCTTCGTCGTCCGAAGCTATCGCGGCCATCCTACTCCGTCGTGCCGTCTCCTCCGGCCGCCAGATCCGGCGGCAGCGGAGCTGGATCCAGCCGCGGGAGGGCCGGATCTGACTACGGCGGCACCGGAGACGAGGCCACGAGCCGCGCCGTCGCACGGCCTGCAAGGAGAGGCAACGGATAGCGAGGGGAGGACGGACGACGTCGGCGGCGGCGGGTGGAGGGCGGACGACGACGGAGGTGACTGGGGGAGGGCGGATGGAGGCGGGGGGAGTC

Explanation	CPC Score
noncoding (weak)	-0.474793

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0178700.2	2	27670156	C	G
Osa02LNT0178700.2	2	27670393	T	G
Osa02LNT0178700.2	2	27668109	C	T
Osa02LNT0178700.2	2	27671006	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0178700.2	osa-miR5804	Translation	3.0	18.564	1	21
Osa02LNT0178700.2	osa-miR164e	Translation	5.0	17.531	1	21
Osa02LNT0178700.2	osa-miR5150-5p	Cleavage	5.0	17.982	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0178700.2	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0178700.2	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0178700.2	2	qER-2b	Physiological trait	Eating quality	nan	nan
Osa02LNT0178700.2	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0178700.2	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0178700.2	2	T2-2tiller	Morphological trait	Culm/leaf	C424	C747
Osa02LNT0178700.2	2	oa2.1	Resistance or Tolerance	Drought tolerance	RM263	R3393
Osa02LNT0178700.2	2	qSDW2	Resistance or Tolerance	Cold tolerance	RM263	RM6
Osa02LNT0178700.2	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0178700.2	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0178700.2	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0178700.2	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0178700.2	2	nan	Physiological trait	Germination/dormancy	RM263	RM221
Osa02LNT0178700.2	2	qGY-2b	Resistance or Tolerance	Drought tolerance	RM526	RM525
Osa02LNT0178700.2	2	qTGW-2a	Resistance or Tolerance	Drought tolerance	RM526	RM525
Osa02LNT0178700.2	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus