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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0179000.1

GGGGAGGAGCCCTGCAGCTAGAGGAGTCGAGCAGGCGCTTGTTGCTCTGAAGAAGGGTGCACATCTCCTGAAATGTGGGAAGAGAGGGAAGCCCAAGTTATGCCCATTCAGGCTATCTTCAGTGAGTAGCTTCGTTACTGTAATTATGCTTAGCAGCATGCTAAAGATCGATTTTATTCATTAACTTTCATGGATTACGCATGCAACCTAGTGACGACTAGAGACATGTAGCAAAACATATGTTCAGTGCCTATGAGATATTTATTTAGTTGTGTTAATCTGAATGTTCTGAACATTTAACATGAATGACTCCATTACAGGCTTATTTACTTAATGCACGGAACTTTGATGGAAGAAGTATAATAACTATTCAGCCACTTGAATTAAACAAATAAAAATTAAGTCCGCATGAAGCTCATGCCAAGTAAATTAACTGATGCTACTTAGTTTGTTTTGGCTTCCAAGTTCTTCACCATGTTCCGTTGAGCAGAGCCATGACCAGAACTCTTAGATGAATTCCGCCCAGTTATCCACTTCTCCTTCATCTATCTGCATATCAAGATCTCACGATGTTCCTCCGCAACCTTTCAAAGATGTTCCTTGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.443942
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0179000.1 2 qSDW2 Resistance or Tolerance Cold tolerance RM263 RM6
Osa02LNT0179000.1 2 nan Morphological trait Panicle/flower RG139 CDO686
Osa02LNT0179000.1 2 oa2.1 Resistance or Tolerance Drought tolerance RM263 R3393
Osa02LNT0179000.1 2 nan Physiological trait Eating quality RG139 RZ58
Osa02LNT0179000.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0179000.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0179000.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0179000.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0179000.1 2 nan Physiological trait Germination/dormancy RM263 RM221
Osa02LNT0179000.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0179000.1 2 qGY-2b Resistance or Tolerance Drought tolerance RM526 RM525
Osa02LNT0179000.1 2 qTGW-2a Resistance or Tolerance Drought tolerance RM526 RM525
Osa02LNT0179000.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0179000.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0179000.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0179000.1 2 qER-2b Physiological trait Eating quality nan nan
Osa02LNT0179000.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0179000.1 2 nan Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus