>Osa02LNT0179100.1

CTAAAAATCTGTCGCAAGTTTATTGCGTAAAATTTTTCAAATGTAAGTATAGTACAATTTTAGTGTAATTACATTGCAACTATACTAAAGTTACAGTGTAATACATGTAACTAATGAAAAGCATGCATATCTCAGCTGTTAAGGAGTGCTTGGTGCGAAGCAGGGACCCTGAGTTCGATCCACCGGACCCACAGCGCGCCTTCACGAATCTCCGTGCACATCAGATGGCCAGAAAATCAGAAGTTGCCCCAAAATAAAACTGTTGGAAGTTTTTTTAGCGAAACCGTTCCAAAAGGACAGGGAGAGACTTTAGACAAAGGCATGCACAAGTGTACAACGCCAACCAACAAATAAGACGGCTCATCGCACCTTTTAGTAATGTGAATGACAGAATGAGAGAAGAAAGGTAGATAAGAGAGACGAGGAGAAGGAGACTGGCCCTATAGATGGACAGGTTCAGGCAACCAAGCATTAGAGCATTGGGGGAATCCCCCCGTATCTATTAACAAATAATTTCAGTCTGCTAAAATGAGAGAAAAACGGGCACCTAAACATTATGCTGTACTGTGTTTTTGCAAACTTGCAACAGCTGGGATACGTACCAATGTTCAGATGCCAAGTATTCTTGCCATGGTCATGCAGCTGTGTTTCTTGCAGTGCTTTTCGCGCAGATGAAACTTCTACCAGTTTATGCAATTTAAAATCGCATATTTGCATGGCTTTCCCAATGTTATGTTCCGAAAGATACACAATATTACTGAAGGTAGGGGTGCTAATGGGTGGAAATCCAATCCATTACTGCCCCAACCCACTTCTGTAACAAGCATCCTTCCAATTCAACCCAGACCACTTCTCCTTCTTCAAGCCCCAAACCAATCCAACCCATAAAAAGTTTTGAACCAAACGAGTCCAACCCATTCTAGTTAAGTGGGTTCAACCAATTCTAAATCCATGGACTGAAACCGCAGTGTCCAATCCTTGGTTCAACTCTCTTCACGCACGTACATACATATACATGCATGCGCATATACATGCGTGTATACTACCAATATACACATGTTCCATGCATGGATGCATATATCCACTTTAGTATCACAGAAACTTTAGTATCACAGAAGCTGTGGTTGCAGCGCCCAGCCGACCACCGGCGCCGCCACAGAGAACTCCGGCCACATGGGAGCACCTCCTCCGGCCAGTGGCGGAGCCAGAAATTATACAAGACTAGGCCTAAGGTAGGGCTCGACTAATGGAGTATTAGTTTTATGAAAAAATTACATGGTGAATCAACAAAATTTAAGCAAGTTTTTGGAGGCAGGCCGCCCTAGGCCTGCCTCCGCCCCTACCTCCGGCCGCCAGCTTCCATGTCTCCACATTTTTGCTGCTGTCTCCACAGAGCAGAGGTGACGACGTCGTCATCGTTAGTGCCAATGATCCGCTGCCCCATCTGGGGCTAAGGCCATGGAGGCCGACAGCTACCAGCCACCTCGTCTGCAGCGCCGCTGGTGACATGGTGGCCCAGACCAGGCAGGCCAAGGTTGAGGTTGAAACCCATGCCAACGCACCCCTCCAGCAGCGGTGCCGCACCGAGCACGAACAGCGAGTCAGAGCAGCTGGCCCACATGCTGGGCAGAGGTCGCCGGCGGCGGCGGCAGGATGATGATGATGAGCCGGTGGTGATCTCGCCGCCATGCTCCTGCCAGCGGTTGCAACGAGTAGTGACACAGAAGGGTGTGGGAGGCAGAGAGGAAGGTGGCAAGCCACCGGCGGCGTCAAGCGAAGTGGTGGTGGTGCCGTGGCTGTCAATGTCATAGGAAGACGAATGTGATTTGGGGACAATCCAGTGGAAGCCCATGGGCTGAATCCACTTTCTACCCAAACTTTCCTAACCAAAACCAATCCAATCCAAACCGTTTTACATCTCCATCCAACCCACCCCAGCCCATTAGCTGCATCAATCCATTTCAACCCATCCAAAGCCAACCCACACTGAAATCCAATCCATTAAATCCATTAGGATCCAATCCATGAGCAGGCCTAACTGAAGGCATCAAAGTTGGCAAAGTTGATGATGTAGTAGCCCCTTTTTCCCTTCAAAGTATTTTTCTCTTTCTGACAATTATGCTCAGAAATTGACATTTTCTACAGTTTTATACAGTTTGCACCCCCAAAAGCATGTCTCACTGGTTAAGCAATGAAAGACTGCAATTTTGTGGTACCCCCCATGACAATGCCCCAAATCTTTTTAAGCTTGGTGGCATAGACATATAATTCCTCCAGTCTTCCATTATGACTCTTAGATCATGAAGTTTGCTCTGTAATCCAATGCAACAGTTTGCATGCATAGTGCAAACCTTGTTTAAATCTCTGCTGGGTTCACAAATGCCACCAAAGTATGTAGTGCTTAGGAACTTAATTTTCAGTCCAATATCTGTAATGTAAGGATCATGCTTTATAAAATTAAATACATCCTGATCATGATAGCCAGGATATCTCAGTCGCGAAGAATACCAAAACTTGTAGAATTCTATACTTTGATTGTTTGACCTCACATAGTTAAATCCCCCGTTTGCTATGTTCCCCAAATCAGTTGCATTGCCTACATAGTGATCACATGCAATCTGAAAATCTCCATCAGGATAGAAATGAGGAAAAGGATTGCGGAACCACGTGATGTCTGCATCCGAGAAAATGAAGCTGTAACCTTTTTCAAGAACTAGCCGCAAGAAATCCAGCCTTTTCCACATCATGTCCAGATAACCAGCAGTCAGAAACCTCTTCTCTTGAGAAAAATCCACATTCTCGGTTGCAAGAGCAAAGCAGTATGCGTGGATCTTCATACACCTTTTGTAAGCCTTCCAATCAAATGTTATTATCACAAGATGTCTCAAAAGTGAGCTAGTCCTAACACCACGGCGAAAACTGTCGATAAAAAGATCAATGACCGAGCCTGAAGAAGCCCATGCAGCATTCAGTGTTGTCAATATAATGGTCTTATTATCCATGGAGGCCTCCTGCAGAACTTGCTCAAGTTTGAGGTCGTCACTGTCCAGATCGTCGGCCGCAGCGGGATCGACGTCGCCGTCCTCCTCGGGGACCACAACAGCAGGGGGCGGCTGGCCCCGCTCCCACCACGGCCCGCGATCCCATCCCACCTGCACCGGTTGGACCGCGTCCAACACCGCGGCGCGGTACAGCACGGCACAGGGCAGCGCCACGGCCGCCGCGAGCAGGAGCGCCGCCGCGGCTTTCCGGAGAGCCGGCGCGGACAGCGGCAGCGACGGCTTCGAGTGCCCAGGGAAGTGACGGAGGGAGGTGGCGGACGTCCGTGCCACGGTCTGGTTCGGCAACGGCCTCGCCATTGCGAGAGCGGCGGCGGCGGCGGCGGCGGATGACCACGACACCGACGCGGACACGCGGCGCGGCGGGGGACGGGGAGGGGAAAGTGCAAAGCGGCAGCGTAACGGTCGG

Explanation	CPC Score
noncoding (weak)	-0.88139

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0179100.1	2	28109749	T	C
Osa02LNT0179100.1	2	28110284	T	C
Osa02LNT0179100.1	2	28111704	C	T
Osa02LNT0179100.1	2	28112376	T	A
Osa02LNT0179100.1	2	28113111	G	C
Osa02LNT0179100.1	2	28109640	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0179100.1	osa-miR7694-5p	Cleavage	4.0	17.769	1	24
Osa02LNT0179100.1	osa-miR160f-3p	Cleavage	3.5	20.703	1	21
Osa02LNT0179100.1	osa-miR171f-5p	Translation	5.0	20.216	1	21
Osa02LNT0179100.1	osa-miR1874-5p	Cleavage	4.5	14.857	1	24
Osa02LNT0179100.1	osa-miR1874-3p	Cleavage	5.0	5.07	1	24
Osa02LNT0179100.1	osa-miR2093-5p	Cleavage	5.0	18.092	1	20
Osa02LNT0179100.1	osa-miR2118e	Translation	5.0	22.46	1	22
Osa02LNT0179100.1	osa-miR2118r	Translation	5.0	22.46	1	22
Osa02LNT0179100.1	osa-miR5511	Cleavage	3.5	19.978	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0179100.1	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0179100.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0179100.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0179100.1	2	nan	Physiological trait	Germination/dormancy	RM263	RM221
Osa02LNT0179100.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0179100.1	2	qGY-2b	Resistance or Tolerance	Drought tolerance	RM526	RM525
Osa02LNT0179100.1	2	qTGW-2a	Resistance or Tolerance	Drought tolerance	RM526	RM525
Osa02LNT0179100.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0179100.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0179100.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0179100.1	2	qER-2b	Physiological trait	Eating quality	nan	nan
Osa02LNT0179100.1	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0179100.1	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0179100.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0179100.1	2	nan	Morphological trait	Panicle/flower	RG139	CDO686
Osa02LNT0179100.1	2	oa2.1	Resistance or Tolerance	Drought tolerance	RM263	R3393
Osa02LNT0179100.1	2	qSDW2	Resistance or Tolerance	Cold tolerance	RM263	RM6
Osa02LNT0179100.1	2	nan	Physiological trait	Eating quality	RG139	RZ58

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus