>Osa02LNT0179600.1

TTAATGCAATTTATGTTTCCTCCATGTAGGTTGCATAAGAGCACAGTTTTCTGATAAAAGATTTTACAAAACTGCAAAAGTTGCAAGTCAGAGACTCGGAGTATTACTGAACTTTGCTGATCGTACCACAATAGATCTGCTGGCTTTTGCCCTTCAAGACCCAAGAGGGCTAGCTTGATGGGAGACTAATCAAGTCCAAGATTCCTTTTTCACGGATGGATGGTCCCAGTTGAGTGGACCTTTTGGTGGGAAGCGGACAAACTAAAGCAGATGCTAACAAGCTGTTTCGTCAAAGATTGGTTCCTACCTGTCTTCCCCGCAGGTGAAGTCGCTGTTTTTTTTCCATGCAACTTTGCAATCATGCTTTTGTCTTTTGCCTGTTGAGATTTTCAGAATGGAACTTGGGGGTAAGTATCAGGTTAGCAGCAGAAAACAACGGGGCCGCATTTCGGCACACTGCATCCATCAAGGAACTGTTGAGTTTGACTTGCCAGTAGAAGAGCCTACGGAGTTATTGCAGCTGCAGCTACAACTAGGCAACACCATTCTAGACCCTCTTCATTACTGCACATGCAGGACTGCTCACTAACATGTGGGACCGATGGTCAGTGGACAATGGGACACATATTATTGTTGGCTTGTAATTGTAGTAAATGGGTAGCCGAATAGGCCCTGTATAGAATGATAGAATAATTTTTGGGAGTAGATTACATGCACGTGAAAATTTATTAAACTTCAGTATAACTATCGTTTTGTTATTATATATGGGTTTAGTTTAATTTTGATTTAAGTTTGAATGCTTTTTCCACG

Explanation	CPC Score
noncoding	-1.02965

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0179600.1	2	28340368	G	T
Osa02LNT0179600.1	2	28340382	G	A
Osa02LNT0179600.1	2	28340686	T	C
Osa02LNT0179600.1	2	28341549	T	C
Osa02LNT0179600.1	2	28342528	T	A
Osa02LNT0179600.1	2	28343127	G	A
Osa02LNT0179600.1	2	28343359	T	G
Osa02LNT0179600.1	2	28343563	G	A
Osa02LNT0179600.1	2	28343592	T	A
Osa02LNT0179600.1	2	28343674	T	C
Osa02LNT0179600.1	2	28343958	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0179600.1	osa-miR1425-5p	Cleavage	4.5	15.79	1	21
Osa02LNT0179600.1	osa-miR1847.2	Cleavage	4.5	23.602	1	24
Osa02LNT0179600.1	osa-miR5501	Translation	4.5	21.87	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0179600.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0179600.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0179600.1	2	nan	Physiological trait	Germination/dormancy	RM263	RM221
Osa02LNT0179600.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0179600.1	2	qGY-2b	Resistance or Tolerance	Drought tolerance	RM526	RM525
Osa02LNT0179600.1	2	qTGW-2a	Resistance or Tolerance	Drought tolerance	RM526	RM525
Osa02LNT0179600.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0179600.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0179600.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0179600.1	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0179600.1	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0179600.1	2	qSDW2	Resistance or Tolerance	Cold tolerance	RM263	RM6
Osa02LNT0179600.1	2	nan	Morphological trait	Panicle/flower	RG139	CDO686
Osa02LNT0179600.1	2	oa2.1	Resistance or Tolerance	Drought tolerance	RM263	R3393
Osa02LNT0179600.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0179600.1	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0179600.1	2	nan	Physiological trait	Eating quality	RG139	RZ58

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus