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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0000700.1

ATTGTTTACATCTTGTAACAAAGAAATTTATAGGCATATCTTTTAAAAAGAAAAAAATACACATTTTAGCAGCAAGCTGCTAGATAATTGTGCAATACATCTATTCATATATCATCTTCGCAAATTCCTTCGCTTCTTTCTTAGATCTTGAAGTGGGCATTCAACTGTCAGAATTCAGCCACTGATCATCTGAATCTTTGATACCATTGCAACCCCAGTGTGGTAGTGTCCCATTCATCTTAAATATATTCTTGCAAACCTTGCACCAAGTGATGTGCTCTGTGAGTTCTTCTCCTGTGGTTCCATCTTTACAATCTCGTAAGCAGGCACACATAGTGATATAGAGTTGCTTTGCCTCATTTTCTTAAGATTTCGTTCCCAAAGTTTAGACATAGCACATCTTATTTTGAACTTCCATGCACAAACCACAACATGCTGATCCAAAATATTGTTCAAAGCTAGTGTTTTAATCAAACAAGTTGACATTTGTTTGCAATAAGAAGTCAACTTGTATTATATTGGTTTTGCTCTTTTGGCCCTCTGTTGTGAGTTGTGACCTTTAAGTAATGATCAGGCATAACTGGATTTTATCGAACAAATCGGTCCATATATACTGCCTGCTTGAAAGAGTCAACAACTTAATCCCCTTGAAAATACTGGCTAGCTGCATAAAAAGTTGTTCTGTTGATGGTGATCACCCAATGTGTTCATGAAACTGAAAGCAATCAAGCACTACTAATTCACAGATTTAGGTTTTTTTTTTTATGAATGATCATGTTGGCATAAGAATTTTGCAATTTCGCGTGATCAGAAAAAGTATGGAGAGATGTGAAGATAACATCAATAATCTGTCTAAGGACAAAATTATGCTTTTACGGAGTTGGCATGCAACAGTACACAGTGAAGCTTTTCATCAAACACATGATGTGCATATGTGTGATAGAGAACAAGCCATCCACTCCTATTAAAGAAGAATTTAGTGAGACAGTACACAAACCACAAAAAGGATTCCTTTGGGTTCTTGTGATGTGCTCACCATGCGTACACAAGAAGGATGCAGTGATCAGATGTGTTTGGACTCTCCAGCAATCAGATGTGTCTCGATCTTGCATCTCCTTCTCGCCCCCTCCTCCGAAGCCGCCGGCGTCTGTAGTCCCTCGACATCGCTCACGCGGCTCACCTGACGAGATCGATGCCGCTCCACGGACGGAAACTCCCCTTTCTCCCCTGCCCACCTGCCACCGTAGGGGCTGCGACGAGCCGACTCCCCTTTCTTGTCGCCGGGATCTGAGTAGTTGATAACACGAGATTGCAGCAGCCAGCAGATGGGAAGCACAGACCTCGGTTGCTCGGGTGATGAGTCGTGGGATGTTGGGTTCCTCCTGGAAAT

Coding Potentia
Explanation CPC Score
noncoding -1.25889
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0000700.1 1 806240 G A
Osa01LNT0000700.1 1 806699 A C
Osa01LNT0000700.1 1 805146 T C
Osa01LNT0000700.1 1 804739 G A
Osa01LNT0000700.1 1 804935 G A
Osa01LNT0000700.1 1 804972 G A
Osa01LNT0000700.1 1 805429 C T
Osa01LNT0000700.1 1 805449 G A
Osa01LNT0000700.1 1 805971 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0000700.1 osa-miR1428e-5p Translation 5.0 16.277 1 22
Osa01LNT0000700.1 osa-miR1428f-5p Translation 5.0 16.277 1 22
Osa01LNT0000700.1 osa-miR1428g-5p Translation 5.0 16.277 1 22
Osa01LNT0000700.1 osa-miR2104 Cleavage 4.5 18.451 1 22
Osa01LNT0000700.1 osa-miR5485 Translation 5.0 17.086 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0000700.1 1 n+p1a Resistance or Tolerance Other soil stress tolerance C161 R753
Osa01LNT0000700.1 1 n+s1a Resistance or Tolerance Other soil stress tolerance C161 R753
Osa01LNT0000700.1 1 Gc Others Others nan nan
Osa01LNT0000700.1 1 nan Physiological trait Eating quality C161 R753
Osa01LNT0000700.1 1 yd1a Morphological trait Seed R753 C161
Osa01LNT0000700.1 1 nan Physiological trait Eating quality C161 R753
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus