\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0180000.1

GCCTCAGAGGCGCACCGCGCAGGCGCGCTCGCCGCTCCGCTCCAATCCTCCCCCAAATCGCGTCGCGTCGCCGCTTCTGTCTCGTCTCCGCCACTCCCTCCGATCTCCCCGCTCCTCGTCTCCTCCTCCTCTCGCTCTGCGGCGCAGCGGCAGGTGCCAGCGCCATCGCCCATCGGCCGCCCGGGCCCGACGCGGCAACACCCCGGCCGGCGGCGGCCACGATTCTACCCCCGCCGCCCCTCATGGCGGCGACGGCGCGTCGGCGTCGGGTCCCTCTCCCTCCTGCTCGACGAGTCGACGGCTCTGCTCCAGCCTCCCTCTAGTGCCCTACTACCCTGCGCCCCTGCCCCTTGCCCCCGGCCGACCGGCCCCTGCTAGTGCATCGGCATAGGTGAGCTACTCATTTTAGTCTTACTTTGAATACATCGGTCATATATGAATGAAAAATGTGGATGGAAAAATGTGATTGAAAACTGAAACTTAGATTTTTTTAAGCAAGATATTGTAAGATATTTGAATTATTTATGTTGTAGCTTTCGCAACTTCGAACTTAAATGTTGGTTTTAATTGTTGTAGCTATCTTGCAATATTTAAATTATATTTCCACTGTATTTGACATATTTGACTTGATTTTGTAACATCGTGACAATTTGAGACGCCAAGTAGGACCACCCAACGATTCGTTCCTGGAGCTGCCACTGAGGCCGGCAGCAGAGAGGGCGGAGCGGCGATGGGCGGGCGGCAGGCGAGCGCGGCGGCGGGTTTGCGCGGCAGGCAAGCACGGCTTGCGGGCGGAGCAGCGGCGGCATGGAGCGGCGCTGGGATGCGGGCAGAGCGGTGATGGGCGGCGGCGGGCGAGCAGACGAGCACGGCAGGCGGAGGAGGGGGCCGCTACGGCGGAGGTGGCCGAAGGAGGAGCGTGGCGGTGGTGGGCGAGCTCCGCCAGCCTACTCAGCCCACCACGTTGCCGAAGAAAGGGAGGAGCATGGCGACAACGGTGGTGAGGCAGACGAACTCCGAGCGCGAAGGGCCCCACGCGGAGCTCCTTGGCGATGAACGTGCTGTCCGGCCACCGGCAGGACGCCTAGCGCTCGACGAAGACGAAGATTGGTTGGACGAACACCTGGTAGGCGCCGACGAGGTGCACGACGATGGTGAACCCGAACCCCATGAGGAGGTTGTCCGGCAACGCGTAGCCCATGCACCCACATAGCATGTAGAACACCGTCGTCGTCACCACGCTCAGCCTCGTCGCGCTCTTCATCACCTTCGCCTCCAACGGTGGCGGCGCCTTGATCGTGTCCTAAACAACAAAACAGAGCAAGCAGCGGTGAGCAAACAAGGTTTGGTTAGAGAAAAAAAAACAGAGCAAATTAACTTTGTAGCTAATGGTGTTAGTCTCACTCACTTGTATCTCGATGAGGATGTTGGAGAAGGAGTAGGCGAAGGTGATGTCACTGAATGCCTGCAGGCTGTGCCACACCTTCTGCGTTGAGCTGACACCGACGCCGATGATGATGTCGGTGAGGCTGCCATGGATCCCGCCATTGGCTACAAATTCAGAGCTCATCACGGTAAGCAAAGACAAATTAAAGAACCAGAATATCTGTATGTGAC

Coding Potentia
Explanation CPC Score
noncoding -1.07033
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0180000.1 2 28574023 C G
Osa02LNT0180000.1 2 28573978 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa02LNT0180000.1 DTM_#DNAt_MULE_japo_Os0949 Chr2 . 28572664 28574991 1616
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0180000.1 osa-miR5526 Cleavage 5.0 8.476 1 21
Osa02LNT0180000.1 osa-miR156j-3p Cleavage 4.5 24.168 1 22
Osa02LNT0180000.1 osa-miR156j-3p Cleavage 4.5 22.868 1 22
Osa02LNT0180000.1 osa-miR416 Translation 4.5 23.867 1 21
Osa02LNT0180000.1 osa-miR1435 Cleavage 4.5 17.164 1 20
Osa02LNT0180000.1 osa-miR1858a Translation 4.0 11.087 1 21
Osa02LNT0180000.1 osa-miR1858b Translation 4.0 11.087 1 21
Osa02LNT0180000.1 osa-miR2092-5p Cleavage 5.0 16.875 1 21
Osa02LNT0180000.1 osa-miR2105 Cleavage 4.0 16.173 1 20
Osa02LNT0180000.1 osa-miR2863c Cleavage 4.0 18.299 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0180000.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0180000.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0180000.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0180000.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0180000.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0180000.1 2 qGY-2b Resistance or Tolerance Drought tolerance RM526 RM525
Osa02LNT0180000.1 2 qTGW-2a Resistance or Tolerance Drought tolerance RM526 RM525
Osa02LNT0180000.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0180000.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0180000.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0180000.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0180000.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0180000.1 2 nan Morphological trait Panicle/flower RG139 CDO686
Osa02LNT0180000.1 2 qSDW2 Resistance or Tolerance Cold tolerance RM263 RM6
Osa02LNT0180000.1 2 nan Physiological trait Eating quality RG139 RZ58
Osa02LNT0180000.1 2 oa2.1 Resistance or Tolerance Drought tolerance RM263 R3393
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus