>Osa02LNT0180500.2

ACACAATCCATATTTATTCCACGTATGAAACCCAAGCCACTGAAGTGTGAGGGCGTTGATGATACAACGACAAGTTTATTTTACGGGGGTTTACAAGACAGAACTTAGTTGCTCTTTTGTTTTTATTCACTGAAAATACTTACAAAGTGAAAGTTCGTCGGCAAAATAAAAGAGCATCACTGTTCACTCAAGGCAAGCCATGAAAAAAAGACTCACGCATGACATCAGGAAATGAACTCACAATTCAGAAAACCTATAACAAACAACAAACTTGTACAGTTTCGTGAGCGACAGTCTTTGCACTTCGAGAAGATCAAGGACCGATGCAGATGGCTTTTAAATATGCTACCGAGTGCACCAGTAATCTCTACGTCGCGCCTCAAGTTGCCAAAACTATTATCACAATTAGCAAGACAACCCCGAAGATCACCAGAAGAATGCAGAGCAGTGATGAATTCGATTTCTGAGTCTTGGACGCTTTCGCGAGTTCTGTCTTTGCCTCTTTGGTTGCTGCTGCAGAATTCTCAATGTTTGTATCGATTTCCTCGATTGTAACTCCTTGAATATGCACAAGTGTAGCAAGATCCTTAAATGCTTCATGTACTTCACCAATCTGTTGTTGAATATCTTGAATAGCTTGCTCCCTTTCCTCAATGATAGCTTCATTGAAAACAATTTCATTATCCAATTGCAGCACCTCTTGCCTCTTTGATTCTGCGAGTAGCGCATGCTGTTCAGGAATTTTACCAGAATCCCTGGCTTCTATACCACCTGTAGTATAGCTACATCATAGTGACCAAAATTCTCAAAGATATTAGAAGATAACCCAGTCAACTCTGCACATGAATACCTTTAGTTTTAAGATAAACCATGTCACTAAATGAGGTCATCAGGTAAACTGCAAGTAAAACGGATGGTCATGACACTGACAAAGAGAAGGCAATGTGTCTTTAAATTAGTTAAATTGTATGTTTTTACAATGCAAAATAATAAGACCCATCTCCATACTTCAAAGGAAGAGAAGCTAATGGAGCAATAACATAGGCAAAGTTATATGACCTATTCAAAGAAAAAAATGCCAATATAAGCTAGGCAGAATCCTAGAAGGTTGCAGCATAAGCAAATGAAATGGATCATGATGAACACAGTAACAAACTATGCCAAAAAGTTGTGAGAAGTATTACTTGGCCAATGGTTCACATAGGGCTAGTTTGGTTTGAAACCCTATCAAAATACTGGTACCAAACCTTGGGTAAATTTTGGCACTACCAAATTTTTGATAGCATAGATTTGGCTCCACTCTATTGATTTGGCAAAAATTGGCTCCAATCCAAAATGCTAACATGCACTATTCAAAACTACCAAAGAATTGGTAGGGCAAAAATTGGCACCAAACCAAAATGGCCCATACACAACAGTATCAGATTATTCAACTTTTTTTAAGATAATAGAAATGGTTTACATCTCCAGCCTCTGCCGACAATCAGATTATTCAACCAAACTCTTTTATCAAGCAATGAGGGCAAAGGAATTGGTTATTACTATACTAGTAACTAGCATGGTGGCCCGTGCAGATTGCGGCTAGCATCTATATTTTATCTCATATAATAGCATATATGTTTTCTCAATTTATTATTAAAATATATTAAAATGACAACATAATTTTAAATTTTGTACTAACTTTACGAAACTACTAATGTGTAATATTCATATTGTATTTTATATACGTGTTAGTTATTAATTATTTTTAATATCAAATTTTAGTTATTTCTAAATTATATTCCTATATGGACTCTAGACTCGTCTTTCAATATTTCTTATTTTTAATTCCAAATTTTCGTTATCTGTAAATTGTATTTCTATATAGACTCTACGCTCTTCTTCCAATATTATTTATTTTTAATTCTGATTTTTTTTTTGTTTCTAATTGTATTTCTATGTGGTCTCTAAACTCATCTTTCAATATTCTTTAATTTTTTATTTCGAATTTCAGTTACTTCTAAATTGTATTTTTATACGGATTCTAAACTCTACTTTTAGTTTTATTATGTTTATTCCGAATTTTAGTTAGTTTTAAATTCCTATATGGACTCTAAACTCATCTTTCAATATTCCTTATTTTTTTTAATTCCGAATTTCTATTATTTCTTAATTGTATTTCTATATGGACTCTATACTCTTCTTCTAAAATTCTTTTTTTTTTATTCCGAATTTCAGTTATTTCTAAATTGTATTTCTATATGGACTCTAGTCTCCTCTTCCAATATTCCTTATTTTTTAATTCCGAATTTCAAGTATTTCTAAATTGTATTTCCATATGGACTCTGTTTTTCTTTTTCTCCGATTAATATGAGAATTTCTAGGCCGTGAGAGCGAACGTGGAGGCTCCTTTTTATATTCCTTTTTATAGATAGATAAATAGATAGATTTGTTAGAATCCATGTGGAAGCCACTGATAAGTAACATGTGCATGTAAATTAACTTCTACACATGGCCATTCGTCGGTATACTATTAAAAACCAATGGCATATCATGGCAGGAAAATGAAACAATCAAACAATACAGAGAAAAGTTTGAGATGAATCGAATGAAAAGTGTACAAGCATTACTTTGGCTGAGATGTCTGGGGAACAACTGGCTTATATGCCATCTCCCTTTGAATCGCAAGATTTTGAAGTTTTCCATACTCCTCCATCGTCGTGGCAAAATCCTTGGCAAGCTTCATGTCAGCAACCCTCTTGTCTGCACTAGTATCGGCGTTCTTGTCTGCCTCAGCAGCTCTCCTGAGCTTCTCCTTCGCATCCTTTGCCAATTGAAGAATGTTATGACTAGTCTTCTGCCATTCACCGCCGCCACCATCGCCTCCCAGTCCCCACCATCGGCCCGAGCGCCGCCCCGCGCGCGGCTATTAGGCCCGCACAGGCGCTGCCTCCGCCTCCGCCGAAACCGCCGTCGCCGCCGGTTTCTTCTTCCTCCGGGGCGCCGCCTCCTCGCGCGCTCCTTTGACTAGCCGTCTTCATCAGGCCGTCGTTATCGCGTCGTGGCCGCCTTCGGGCGCCAACCGCCTCTGCCTCGCCGCCACCATCGCCTCCCCAGTCCCCACCATCGGCCCGAGCGCCACCCCGCGCGCGGCCAGTCGGCCCGCACGGGCGCCGCCTCCGCCTCCGCCGAAACCGCCTCTGCCTTGCCGCCCTTCTCGGTCGCCGCGCCGGCCGCCATCGCCGTCGCCGCGCCGACTGCCGCCGTCGCCACGCCCATCGCCGCCCAGCGCCG

Explanation	CPC Score
noncoding	-1.09104

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0180500.2	2	28969515	C	T
Osa02LNT0180500.2	2	28968607	C	T
Osa02LNT0180500.2	2	28969596	C	T
Osa02LNT0180500.2	2	28969687	T	C
Osa02LNT0180500.2	2	28969764	T	C
Osa02LNT0180500.2	2	28971305	C	T
Osa02LNT0180500.2	2	28971710	A	G
Osa02LNT0180500.2	2	28970889	A	G
Osa02LNT0180500.2	2	28970588	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa02LNT0180500.2	DTM_#DNAt_MULE_japo_Os2537	Chr2	-	28972128	28973762	1321

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0180500.2	osa-miR5817	Cleavage	4.5	3.769	1	24
Osa02LNT0180500.2	osa-miR5512b	Cleavage	5.0	15.734	1	21
Osa02LNT0180500.2	osa-miR7695-3p	Cleavage	5.0	13.552	1	21
Osa02LNT0180500.2	osa-miR817	Cleavage	5.0	13.957	1	21
Osa02LNT0180500.2	osa-miR2098-3p	Cleavage	5.0	23.25	1	20
Osa02LNT0180500.2	osa-miR2864.2	Cleavage	2.5	13.376	1	21
Osa02LNT0180500.2	osa-miR2864.2	Cleavage	5.0	13.685	1	21
Osa02LNT0180500.2	osa-miR2918	Cleavage	5.0	14.861	1	21
Osa02LNT0180500.2	osa-miR5081	Translation	5.0	11.627	1	22
Osa02LNT0180500.2	osa-miR5146	Translation	4.5	15.329	1	24
Osa02LNT0180500.2	osa-miR5494	Cleavage	4.0	14.283	1	21
Osa02LNT0180500.2	osa-miR5512a	Cleavage	5.0	15.734	1	21
Osa02LNT0180500.2	osa-miR2275c	Cleavage	4.5	8.955	1	23
Osa02LNT0180500.2	osa-miR2275c	Translation	5.0	4.235	1	23
Osa02LNT0180500.2	osa-miR2275c	Cleavage	5.0	4.809	1	23
Osa02LNT0180500.2	osa-miR5817	Translation	5.0	7.918	1	24
Osa02LNT0180500.2	osa-miR2275c	Cleavage	5.0	8.343	1	23

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0180500.2	2	nan	Morphological trait	Panicle/flower	RG139	CDO686
Osa02LNT0180500.2	2	oa2.1	Resistance or Tolerance	Drought tolerance	RM263	R3393
Osa02LNT0180500.2	2	nan	Physiological trait	Eating quality	RG139	RZ58
Osa02LNT0180500.2	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0180500.2	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0180500.2	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0180500.2	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0180500.2	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0180500.2	2	qGY-2b	Resistance or Tolerance	Drought tolerance	RM526	RM525
Osa02LNT0180500.2	2	qTGW-2a	Resistance or Tolerance	Drought tolerance	RM526	RM525
Osa02LNT0180500.2	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0180500.2	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0180500.2	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0180500.2	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0180500.2	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0180500.2	2	qSDW2	Resistance or Tolerance	Cold tolerance	RM263	RM6

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus