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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0181700.1

AATCAATACCAGCATCTAACAGACATTTTTTTAAGCTTAAGAGTGATCCTTGTTCACAGCACGATAGCATGGAGTATATATCCCAAAAGGTTGACAAACATGTCAAAATTCCAAGCGCTTAAGAAAATGCAGTCTTGAATCATCAACAGTAGATAACAAAACGCTAAAGCAAGACTTCCAAATTTGCTCTCAGCATAGTGACTGGAATCATGGAAATATGCACTAAGCGCTAACTGACAGATAACAATGAAAAGTTTACTCCTCATCCTCAACAACCTTGGTTCCCAAACCCTTGAGACCCTCTGCAGGGATCTCAGCAACTGTGACCAGAGAGTAGAGCTCCTCCTTGGCGTCCTCCTCATCGTTTCTCTTGCGAGAGATTCTAACACGGACTCGCCTTGGGACACTCCGGATACCATTGGTCCAGATGGCCTTGTTAAGCTTCACGTCGATGCGTATATCCGTTGTGCCCATGGCCTTCTGTGCAAACTTCCTGATCTCCTTGATGGCATTCGGCGCCTTCTTCTTGAAGGTGCATCCGTGGAGACGCTTGTGGAGGTTGATGGTGTACTCGCGGGTCACCACCTCGTCCTTGCGGGTGCCGGCGCCGCGCTTCTTCTCCGACATCTTCGCCTTGCGCCGCCGCCGCCGCCGCCTTCGCGCTTCTCTCCTTTGTCTGGCTCCGAGGGAGGCTGCGGCGAGAGGAGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.902073
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0181700.1 2 29795465 A T
Osa02LNT0181700.1 2 29796116 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0181700.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0181700.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0181700.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0181700.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0181700.1 2 AsS Resistance or Tolerance Other soil stress tolerance RM318 RM450
Osa02LNT0181700.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0181700.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0181700.1 2 qER-2a Physiological trait Eating quality nan nan
Osa02LNT0181700.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0181700.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0181700.1 2 nan Morphological trait Panicle/flower RG139 CDO686
Osa02LNT0181700.1 2 qSDW2 Resistance or Tolerance Cold tolerance RM263 RM6
Osa02LNT0181700.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0181700.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0181700.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0181700.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0181700.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus