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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0015500.1

ATTCTCTCACCCCCATCTCCTCCTCCGGCCCCCTCCCCTCTCCTCTCCTCCCCTCTGGCTCCCCTTCAGCGGGCGGCGGTGCCCGACATGCGACGACAGGGGTGATAGGTGGTCGGGCGGCGACGGCCTGTGCAGTGGGTGGCCACGGTGGTGGGATGGGAGGCGGTGCACGGCGGGCGGCGACCGACGCGGCCCCGAAGACGACGGTGAACCGCCGGCCGATCCCTTCCCTGCGGCGAAGGAGGCGACGAGCATTTGGATATGTGAATTTGCTGATTTTATTGATTTATCTATGAATTTGTTGATTTGTGATGTGTTTGGATCTGTAAATTTGTGATGTGGTGTTGACGTG

Coding Potentia
Explanation CPC Score
noncoding -1.03204
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0015500.1 1 11670229 T C
Osa01LNT0015500.1 1 11670405 T C
Osa01LNT0015500.1 1 11670387 A G
Osa01LNT0015500.1 1 11670273 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0015500.1 osa-miR814a Translation 5.0 15.476 1 22
Osa01LNT0015500.1 osa-miR814b Translation 5.0 15.476 1 22
Osa01LNT0015500.1 osa-miR814c Translation 5.0 15.476 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0015500.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0015500.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0015500.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0015500.1 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
Osa01LNT0015500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0015500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0015500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus