>Osa02LNT0182200.1

ACACAGTTTTGTCGATTATTTCCCCTTCAATTGCGCGACGTACGCATCGCGCTGAAAGCCTGAAACAAGCAGCGAAACGCATCTGCCGCCAGGGAAACATCAACTTTCAGAACTTACTACTGATAACTAGAGCGGCCACTTGCACCGTAAGTAAACAGACAAGTAGAGGCTAAAAAACCCAAAAGAACCATCTCATTGTTTAAGCCAGTTACCCCAAGGTTAGCAATTAGCAATTCTGAGTAGGCTACTTCAGCCATTTCTAGCAACATTTGCAGTTAGATACGGTAGTCTCTGAACTCAGGTTCAACCTATCAGACCTAGATAAGTAAAGTGCACATGGCACTTGGTTGTTTTTTTTTGCATACACAGCGCAACCTGATTTGACAAAACATTCAGAACATTAAAGACAAACGCAAGTTGCGAATCTCCATTTCTTGATCCACAACATATCGGCATAGCTTCACTGGAGATTCACTTAGCAGCTTTTATGTCAGCAAGCGCAGTGAGAGCCTCCATGATGGGACTTTCGTTGAGTGATCTAGTGGCCTTCAGGGATGGTACTAGCGCATAAACCTCTTCAATGGTCTCAGGTCCAACGTTCGCTATCAAGCACATCTCTCCATCACTAACACCATATTTTCTAAGAGGGTCTAGGACTTGTTTCACAGACTGTGCGGTGGAAAACTGATTTCCTTCTTTCACATATTGGAAAGCCTTATCAAATGACTCTGGAATTTTGATCTTTGGATCCTCTGATAAGATAGCCATATGCTCATGAATTTCTTGCAATAGTTCTGCTACTTCACAATTCATTAAAATGCAAGAGTTTGGAGGCATATCGAGCTCAAGCTTTAGCTCTGCATCAGACTTTGCAGAAACTCGAGCTGATGCAGAACCCTTTCCACCTTTGCCAGCATTCCCTCCTTTGCCAGTTTGTCCTTTAGATGAGGCCTTCCCGCCAGTTTTTAGGCTCTCAGATGCAGCCTTCCCATTTGTTTTAGAGTTGACACGAGGCAGTTCTTCCACGAAACCTTCAGAATCAGAATCGGAATCAATATTAACATGCGGGATATTGGCAGAGCTGTTTTGCCTAAGTGAACCTTTCTTGGACGCGATGGCCTTCCCCTTGGAGGCCGCGGAGAAGCCCCTCGATCCCCTCTCCGCCATCCCCCGCGTCCGCCGGAGGAGGAGGTGGGCGGCGGCGGCGGCGGTGGTCGGGAAGGGGACACCGGAGTCGCCGACGTCCGTGCGTGCGAGAGGGAGGGTGGGAACAACCAGAGGGAGGAGTCGCTGTGTC

Explanation	CPC Score
noncoding (weak)	-0.711358

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0182200.1	2	30053604	G	A
Osa02LNT0182200.1	2	30053686	G	T
Osa02LNT0182200.1	2	30053743	C	T
Osa02LNT0182200.1	2	30053756	A	C
Osa02LNT0182200.1	2	30053853	G	A
Osa02LNT0182200.1	2	30054791	G	A
Osa02LNT0182200.1	2	30055423	T	C
Osa02LNT0182200.1	2	30055914	T	G
Osa02LNT0182200.1	2	30056913	T	C
Osa02LNT0182200.1	2	30057202	A	G
Osa02LNT0182200.1	2	30057479	A	G
Osa02LNT0182200.1	2	30057764	C	A
Osa02LNT0182200.1	2	30057888	G	A
Osa02LNT0182200.1	2	30058130	C	T
Osa02LNT0182200.1	2	30058284	C	G
Osa02LNT0182200.1	2	30058325	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0182200.1	osa-miR5533	Translation	4.0	14.962	1	21
Osa02LNT0182200.1	osa-miR395v	Translation	5.0	13.893	1	21
Osa02LNT0182200.1	osa-miR1861e	Cleavage	5.0	12.446	1	22
Osa02LNT0182200.1	osa-miR1861k	Cleavage	5.0	12.446	1	22
Osa02LNT0182200.1	osa-miR1861m	Cleavage	5.0	12.446	1	22
Osa02LNT0182200.1	osa-miR395x	Translation	5.0	15.872	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0182200.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0182200.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0182200.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0182200.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0182200.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0182200.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0182200.1	2	AsS	Resistance or Tolerance	Other soil stress tolerance	RM318	RM450
Osa02LNT0182200.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0182200.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0182200.1	2	qER-2a	Physiological trait	Eating quality	nan	nan
Osa02LNT0182200.1	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0182200.1	2	nan	Physiological trait	Eating quality	nan	nan
Osa02LNT0182200.1	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0182200.1	2	nan	Morphological trait	Panicle/flower	RG139	CDO686
Osa02LNT0182200.1	2	Hd7	Physiological trait	Flowering	R3393	R2511
Osa02LNT0182200.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0182200.1	2	qSDW2	Resistance or Tolerance	Cold tolerance	RM263	RM6

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus