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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0182700.1

TGGTACAATGGCATTACAAAATTTACAATCAAGTGTATGAACGAATGAGTTGAATTGGGAATTTTTAGAGATAGCAATACATATACTCGCTATAGAATATGGAATTCTGGACTACATTTACAGATGATGAATGAGAAATTGGGGAGTGTCCTCAAGACCTCCCCTGAAGGAGCTTCAATGGTATATGAATGGATGCTTAGGTTAGTTAATTGTTGTTGCAATATAAATAAAATAATTGCATCAATTGGGGATTGTGGTTGCTGCTACCAAGTTATTGTCTGAACTTGATGATGTCTGAATTTTCTAGTTTGGAGAAAAAGTTCTAGCTTTTATTGCACCGCCTCTTGGTTATTTGGATGGGCTCTTCATCTTCATTGATCTTTGAGTTGTCACTAGTATTATCTCTTGCTCGTTTGGCCAGGTTGATCTCTACAGCTATATTAGCTTGAGATGGATCTAGTCCTGACTTTTTAAGAGCTTCTGTCAATCTGTTGAATAATCCTTGAGAGTAAGCGCTAGAAATACTATGGTTTTCATCGTGAAGGGTCTGTTTCTCATGCTTGTTCGGCATTTTGTTGCCTGGTTCAGACTCTTGGCGCATTGTTGACATGCTCAGCCATGGTGGCTGATTGCTGGGTGTGCTGTTCTTTTCCAAATTTTGTGGTGTGCCTGTTGCCATGTGGGAGGAACTGGTGGTTGTACTGGTTACACTCTGTGTGTTGAAGAGAGCAGGTTGTGCTGCCGATATGTGCTTGGGACCGTACTGTTCGTTGTTCATGTCCTGTGTGGATGGTGACAAATCTTCCCCCTGGACTTGACTGGTGTTCTTTGTGTTTCTCCAGCATGATCTATAGTAGACTTTTGCCCATGGCATGGATTTGGAATCCTCGTGATTCCTTTCTGGATCGGCTTCCTCATACTTTTGGACTTTCTCTTGCAAAAACCTTATGTATTCAATAACCTCCGAAAGGAAAGAAGCTTTGTCTCTCTTCTGATCAGTGTGTGGCAGGAGTTCACGAAGTATTTCAAGCCTGTCATTTATCTTGGTCCTCCTTCTCTGCTCAGTTGCTGAATGCTTTGATCTCGGAGTGCTGGGTCCCTGATCGGCGCTGCTGGCGCTACTTCTTCCCTCTGCTCTTGTTGCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCCGCCCGGTAGCACGTGCTCCTCCGAGTCCGAACCTGCCGGCGACGCGCCGTCGACGGCACTCCCCGCCGCCGTGCCATTGCCGCTGCTGCGGCCGCGCTGCTTGGCCAGGTCCAGTGGCCTCAGTGATCTGCGGATCTCCAT

Coding Potentia
Explanation CPC Score
noncoding -1.06146
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0182700.1 2 30233169 T G
Osa02LNT0182700.1 2 30233761 A T
Osa02LNT0182700.1 2 30233780 T C
Osa02LNT0182700.1 2 30234218 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0182700.1 osa-miR5818 Cleavage 4.5 15.452 1 21
Osa02LNT0182700.1 osa-miR164a Translation 5.0 20.686 1 21
Osa02LNT0182700.1 osa-miR164b Translation 5.0 20.686 1 21
Osa02LNT0182700.1 osa-miR159c Translation 4.5 13.014 1 21
Osa02LNT0182700.1 osa-miR159d Translation 4.5 13.014 1 21
Osa02LNT0182700.1 osa-miR159e Translation 4.5 13.014 1 21
Osa02LNT0182700.1 osa-miR164f Translation 5.0 20.686 1 21
Osa02LNT0182700.1 osa-miR530-5p Cleavage 2.5 22.724 1 20
Osa02LNT0182700.1 osa-miR2091-5p Translation 4.0 15.172 1 21
Osa02LNT0182700.1 osa-miR2093-3p Cleavage 5.0 19.384 1 20
Osa02LNT0182700.1 osa-miR2873a Translation 4.5 14.221 1 24
Osa02LNT0182700.1 osa-miR812n-5p Cleavage 4.0 22.239 1 24
Osa02LNT0182700.1 osa-miR5083 Cleavage 5.0 11.89 1 20
Osa02LNT0182700.1 osa-miR2880 Translation 5.0 15.815 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0182700.1 2 qSDW2 Resistance or Tolerance Cold tolerance RM263 RM6
Osa02LNT0182700.1 2 nan Morphological trait Panicle/flower RG139 CDO686
Osa02LNT0182700.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0182700.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0182700.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0182700.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0182700.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0182700.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0182700.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0182700.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0182700.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0182700.1 2 AsS Resistance or Tolerance Other soil stress tolerance RM318 RM450
Osa02LNT0182700.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0182700.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0182700.1 2 qER-2a Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus