© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa02LNT0183400.2
GATAGAATTTGGTGTTTATGTTATAAATTCTGAATCAAGTATTTTACATTCATGTACAACAACGCTAGCTACAAAGTGAAAACATGGATCGGGAGAATAATGTCTCTCTCTAACCACTAGGGCAATCTCAATCTACATCCCGGCCTAATGAAGCTATTAGTTACAACTACTGTAAATCATCAACCTTTATCCCTCCAGCAAGATCTAGGGGATGAGGTCTGGTCTATTTTACAACATTCATGAACTTGTAATTTTCATTTAACAGGCTAATTTTCATTCATGAATTTGTGATGGCCATAAGGAGCAAGCAAATTTTCATTTAACAAGCAGCGGCAATTAGAATCTCGCCTTCTAGAAACACATTCGAACAACCTCCCATCTTTCCGACTGAAATATGTCAGTTCTCCTCCATGGCCTTGTAATACTAAGATGGGTTTTGAACTAACTTGGGGTGAGTAGCTGCGTAAACTGAAGAGTTTGGATCAGTCTTCAGGTGGGATAGAAGATGTTGCACATCTGGCCTCAGAATTTCCATTACTTTCCCACATAACGTCAATATCTCTAGTTTGGGCTTGCTAGTGCTCTGAACGGGACCTCCTTGACCCTCATACATGACTGCATGGTGCAAGAAGTCAATTATGTCAGCAATTTCCGATGCCTCCACAGGAGGTGAAGCCTGAGAATTCTTCCCAAATACATCCCCCAACACATTGAACAGCAAAGCCAAGGTCTTCATGAACAGAGGTCGAGCAAAGGCTAGACGAGGCAACAAGGGACCCAATATGCGGAAAGCAATTCTTAACATGGCAACTGAGTTGACTGGCCGAAGATGCTTGATGACGGTATGGGTAGATTCAAGCCATTCATGTGGAAGATTGCTGAAAAACGAGTGAAGAAGGGCAACGATGTTACCTATGGCTGTAGATGTATTGTCTTGAGAAGCCCAAGTAGGATCCAACAGTGCATACCCAACAGCAGAATCAAGCTCTTTAACAGGCCTTGAACTATCAGCAAGCCACCAACAATCTTTTATGATCCGGGCTGCTTCTGCATATAGAAGTGTGTGGAATTCTGGTGGGAGTTGTGCCAGCAACAGACCACAAGCTTGAATCATCAGAACAGACAATTGTTGGCAGGAATAGCCACTTCTAGAAACAAAGTTAGATGCATTGATTCCACTTGCTGTGGTGTTTGGTCGGTTGGCACCAACAGGTTCAACTCCCCCACCTGAAGAAGTCGGCACCCCAGAGTTTTGGCCCAAACCACCTGACATTCCATGACCACTATTTGACTGTATGAGCATTGCTTGTACATGTGCTATTATTTGAACTAGAGAGGATACTATTTGAGAAGCTGGCACACAAAGTGAGAGAATTTCAATGGCTGCTGTTTCCAAAACAAGCTGTGTATATGATCCAGGATCCTGATTTTGATAAAATGCCCTCTGACCATCAGAGTTACTGATTCCTCCAGCGGAAGATGTATAAGGCTTGTTATAAGTTGTGCGTGCTGTACTGCCAGCAGCATCCGATGGGTTTGATTTGGACTTGCAACTCAAAGGAGGTATGACATTATTAACAAGGCCAAACAAAAGGTTGGCGAAGTATTCCGGTGGTGGACAAATAGATGAATTTGATGACGCTAGATACTGGGCAAATGATTCTGAGAAAGGTGTCTTAGTGCTAACACCCAGCACGTTGAGGATCCTAACAATTAACTTGGATGGAAGATGACCATAGAAATATGCAAGAATATCACGCACAAATGTAAACCTTAGAGGATGGAAGGCCAGAAAGGTAGAATAAACTGCAAGGACTCTATCTGCGATATCTGTGGCATCGTTCTCAATAAGCCTATAAATTATCAACGGGATGACTAGAAGCAGACGAGCAGCAATGTCATCAAAAAAGGGGGGGTAACGTTCTTTCCCTGAGAGATGGTTACCGAGGGCTTTCTGAAGTTCTACTCTTTTTGGAGGCTGATTTTTTAGCCAATGCTCTGGAGAACGCGAAGTGCAGAATGCTTTAATTCTTTGCTGAAGTTCCGGTCTTTCAAGGAGATTTATCACAAGGCGTAAAGCATAAGGATCATCATCTCTATCAATAAGAGCTAACAGAAGAATGTCCAATGGAAGTAACTCATGTGTCCAGATAAAGAAAGCAAGATTCGTAATTGCTTTAGAGAGTAAGTCCTGAATTTGATGCCCTCTTTGCAGCTCAAGTTGGATATGATGCAGAAGAACATCAACCATTGTATAAATATTTGCTGTAACTTCTTCGGGTGAAAACTCTCTCAAAACACGGGCCTGCAGTAAGATTAAAAAGACATATATACATAGAGAGAATCTTTTATGTCAATATAATTGCTAATTAGAAATCATACAAGATTTGCACTGTTGATCTCTAGATGTCCGTTCATCAGCATCCAAGCACCAGCACAAAGATATTGACGATGCTGAGGGAAACTGTGACTTAAATATGTCATAACATAGGTTGGCTCAGCAGATGGTGAGAGTAGCTGATTACATTGATTAATAACAGTTGTCTCAGCCTGCTGCCATGCTTGGATAGCTTGGCCTCTCTTATCCATCCTCCCCATTAAAAAATCTCGAATAAGGGGAGGAAAATATCTTAGAGTCTTCTCTGACCATGTATGCTGGCTCGTTGCCATAATTTGCTCTAATAATGGTTGAAGATGAATTATATGTTCGACCTCAGCAATTCCACGTGTCTTCATGGTGATAGCAAGGCTTATTATCGTTATGCGGTTAAGTGTTTCAGTAAACTCAGTTGGACCCTTCAATTCTTTTTTCACCAAAAAGAAGTCTCTTAGTGAGAGAATCAAATTCATGCACAAATTTTCTGCTAATCTAAAAAGACGATGCTCTCCACGTTTGACTTTAATCATTGATATTATCTTTGTAACATCATACATCAATGCCTTGCTTTTCCCATGATACCTGTATAGAGGAAGTAGCCTGTAATTCAGTATCTCAAGTAGGAGCAGAGACACACCAGATTTGCTCAGGATAGATGGAGATCTTTGTGTTAATGTCGTAAAATGCGGGCGGAACAATGAATGAGGGGTTATAAGCAGCAGTCTAACATAGGTTTCCACTATAGCAATGCTAGGAACATTCTGGCCAAGAAATATGGTCTCTTCAAGCTGGAAAGCAAGTTTCAAACATAGATTGATAGACAACCCAGAAAGCAATGACATAGACAGTGGATAAGTTTCACGCATCATTGTCATTCTTTCATTTGGCTGCAAATTGGGTCCCTGAATTAAATCTGCTACTCCTACTGATGTAAACCAGTTCATGACTGCTTCACATGCTGGTTGTGCCATGGTGAAGGAGAGAACCCAAAACATGCCCATCGCCCGCTCATCCAAGCTCGTAAAATCTATCATCCTCTCCCCAGAAGCTTTTGTCATTTGTCTCCACCACTCATCTATCTGTTTGCCTTTCTGAAGCTGATCACTGTTCAAATGCTCTCTAATTGAAGTGTTGAAAGACCAAATCCGCAAAGTTTGGCTGCTACTTATGAAATCAAGAAGAATACTTTGAGGACTGATATTATTTGGATCAAGGCTCTTGTCTTCTTTGTGGAACGAAATTATCTTCCTTGTAGTTTCAACCTTCCTTGGGTCCGAACTAAGGGTGTTCATCACAATCTCAATGCGGATAATCTGTGCGAGTAACCAAGTGACATGATTACTGCGAAGAATCTGTTGATCACTATTTGTTACTCGAGATGCAAGCTTGTCCACGAAATCAAGAAAATCAATACAGCCACTTTTCATCAGAAAGAAAAAAATGTCAGCAAATAAAAGCCAATCTTGCCAGCACTGAGTCTCTGAGTTCGTGAGCCTCAGTAGTTCAATTGTCCTGTCAGCAACTGCCTCACCGATCATATCAGGTGAGAAAACAGCTCCTGGCGTTGATGATTGTTGAGGATGTTGTCTATAACAAGGAGCAACAAGAAGAACACGCCTCCACCAGTCTGGTGACGGAGTTGTGCGGAGTGCATGCCTCAAGCAACGCAAAGCACGTTCCCAGTCTAAACCCCCTTTAGGAATGGAGTTTGCAAGATCCTCTCCGTGTAGCGGCTCTCCCAATACACTTGGATAAGTAATGGGAGAATAACGCAAATTAGCAACAGATTCACCAGCTATGCTTGGGTATGATTGCGACAAGAACCGATGAGTTGCAAATGTTGGGCAATGAAGGTGTTGATCCAACATCTGCATGTGCATACATACCATGTCCCTCCTCCTATGGATCTCCATAATAATACTAACTAGTGCTTCATCGTCAGGAATATTTTCGAGAAACTGCAAGTTGCTGCGAACAAGCTCGTAGAATGGAACACGACATTTATCTTCATTAACTAGAATCCATATCACATCTAAGCATAGGTGCATCCATTCATGCAAAGGTCTTTCAAGCCTCAAGGTTTGCAATTGCAATGCATCAGCTTGGTCCACACCATGCGGTCGCTGGTCCCAATTAACAAGCCAATTTACCATATGCTGGAATATCACAGCATGGGTGGCTGGCTTCAAATCAGACTCCAGCCCTGCTAGAATAATTCTACAGGATAAGTGATGCAGATAACTAATTTCTGCTCCCCTGCGAGACTGGTCACCTCTAGCTGTCAGACCAAGCTGTCCAGGGCTAGAGAATTCTGCTCCCTTAATGGGTGAGACATTTGCACCTATGGGTTGGTCGATACCAGATTGAGTGGGAGATCCTATAGTGTTCATTGCTGACAATGGAGATGTGGGATTTGAAGGGTGAAAGCTTGGGGCATTTGGCACTGCAATAGCTGATGAAGAAGATGTTGCCGGGCCACCAGTAGTCACAGAAACCCCTTGCCCCATTGGTACCTCCACGGAGGAAACTACATTAAGTAGAGAAGGAAGGAGACTGTCCCATCGAAGGTGGCCTCGAGCACACAGGCAACGTGTGGCAAAGAGCAAGAACTCAGATTGTGGGGCGTGGCTACTACACTGCAGGACAAATGAGATGAGAACTGATTCCGTAACTGCCTGCAGCTGCTCTTGGTCTGGGAACTGCATGTGCAACTGCTCAAAATCCGAAATGAATTGCTCATCTCGGGGAGGCAGATCTCTGTTCATAGCAGTTACTCTCTTCTGCAACTTGTTCGAGGTCTCCCTAGTTGGATCCTCGACCCGCTGCTTCGAGTTCATGCCGAGGTATAGGGTGAAGAGATCGGCGATGGACGACCGCGCCGGGTGGTGGTGGTGGTGGTGGAGCTGCATCTGCCGCTGCTGCGGGAGCACCGCCGAAGCAGAGATCGCCGGAGACATCGGCTGCCTCTGCCCGTGCGCCCCGTCCATCGCCGATGCGCCGCTTCCGTCGCCGGCGACTGGAGTGGTGCGGTGGGCTTGCTCCGACC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa02LNT0183400.2 | 2 | 30544396 | A | G |
| Osa02LNT0183400.2 | 2 | 30544765 | A | G |
| Osa02LNT0183400.2 | 2 | 30545411 | T | G |
| Osa02LNT0183400.2 | 2 | 30547004 | T | A |
| Osa02LNT0183400.2 | 2 | 30547317 | T | G |
| Osa02LNT0183400.2 | 2 | 30547430 | C | G |
| Osa02LNT0183400.2 | 2 | 30547528 | A | G |
| Osa02LNT0183400.2 | 2 | 30552134 | T | C |
| Osa02LNT0183400.2 | 2 | 30552352 | C | G |
| Osa02LNT0183400.2 | 2 | 30552961 | C | G |
| Osa02LNT0183400.2 | 2 | 30545225 | G | A |
| Osa02LNT0183400.2 | 2 | 30543530 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa02LNT0183400.2 | osa-miR5828 | Cleavage | 4.0 | 18.6 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR5832 | Cleavage | 5.0 | 21.748 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR5516b | Cleavage | 5.0 | 12.237 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166a-3p | Cleavage | 4.5 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166b-5p | Translation | 5.0 | 10.853 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166b-3p | Cleavage | 4.5 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166c-3p | Cleavage | 4.5 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166d-3p | Cleavage | 4.5 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166f | Cleavage | 4.5 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR169f.2 | Cleavage | 5.0 | 16.232 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166g-5p | Cleavage | 5.0 | 22.519 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166g-3p | Cleavage | 4.5 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166h-3p | Cleavage | 4.5 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166i-3p | Cleavage | 5.0 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166m | Cleavage | 4.5 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR166j-3p | Cleavage | 4.5 | 22.69 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR413 | Translation | 4.0 | 23.826 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR443 | Cleavage | 4.5 | 19.088 | 1 | 22 |
| Osa02LNT0183400.2 | osa-miR1428e-5p | Cleavage | 5.0 | 14.912 | 1 | 22 |
| Osa02LNT0183400.2 | osa-miR1860-5p | Cleavage | 4.0 | 24.819 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR1865-5p | Cleavage | 4.0 | 13.648 | 1 | 24 |
| Osa02LNT0183400.2 | osa-miR812g | Cleavage | 4.0 | 6.693 | 1 | 24 |
| Osa02LNT0183400.2 | osa-miR812h | Cleavage | 4.0 | 6.693 | 1 | 24 |
| Osa02LNT0183400.2 | osa-miR812i | Cleavage | 4.0 | 6.693 | 1 | 24 |
| Osa02LNT0183400.2 | osa-miR812j | Cleavage | 4.0 | 6.693 | 1 | 24 |
| Osa02LNT0183400.2 | osa-miR1428f-5p | Cleavage | 5.0 | 14.912 | 1 | 22 |
| Osa02LNT0183400.2 | osa-miR1428g-5p | Cleavage | 5.0 | 14.912 | 1 | 22 |
| Osa02LNT0183400.2 | osa-miR2090 | Cleavage | 4.5 | 12.281 | 1 | 22 |
| Osa02LNT0183400.2 | osa-miR2098-5p | Cleavage | 4.5 | 16.395 | 1 | 20 |
| Osa02LNT0183400.2 | osa-miR1863b | Translation | 4.0 | 16.082 | 1 | 24 |
| Osa02LNT0183400.2 | osa-miR5081 | Cleavage | 4.0 | 24.57 | 1 | 22 |
| Osa02LNT0183400.2 | osa-miR5506 | Translation | 4.0 | 21.81 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR5516a | Cleavage | 5.0 | 12.237 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR2275d | Translation | 4.5 | 14.41 | 1 | 22 |
| Osa02LNT0183400.2 | osa-miR5524 | Translation | 4.0 | 13.336 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR5541 | Cleavage | 4.5 | 15.366 | 1 | 21 |
| Osa02LNT0183400.2 | osa-miR390-3p | Cleavage | 4.0 | 18.089 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa02LNT0183400.2 | 2 | qSB-2 | Resistance or Tolerance | Sheath blight resistance | G45 | RZ273 |
| Osa02LNT0183400.2 | 2 | qCHR-2 | Others | Others | RM263 | RG520 |
| Osa02LNT0183400.2 | 2 | nan | Physiological trait | Eating quality | C621 | C370 |
| Osa02LNT0183400.2 | 2 | qDLR2-1 | Resistance or Tolerance | Other soil stress tolerance | RM525 | RM406 |
| Osa02LNT0183400.2 | 2 | qDLR2-1 | Resistance or Tolerance | Other soil stress tolerance | RM525 | RM406 |
| Osa02LNT0183400.2 | 2 | Hd7 | Physiological trait | Flowering | R3393 | R2511 |
| Osa02LNT0183400.2 | 2 | qGRH-2 | Resistance or Tolerance | Insect resistance | C621 | C601 |
| Osa02LNT0183400.2 | 2 | nan | Morphological trait | Seed | C747 | C1445 |
| Osa02LNT0183400.2 | 2 | qPH-2 | Morphological trait | Dwarf | RG324 | RG83 |
| Osa02LNT0183400.2 | 2 | qLTSPS2 | Physiological trait | Sterility | RM1385 | RM240 |
| Osa02LNT0183400.2 | 2 | nan | Morphological trait | Panicle/flower | RG139 | CDO686 |
| Osa02LNT0183400.2 | 2 | qLTSPS2 | Physiological trait | Sterility | RM1385 | RM240 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)