Transcript

Sequence

>Osa02LNT0183600.1

GATGATCCACAGGATGGGACAAGTACCGTAGCACAAATGCAATTCACCAGATCGTCCGATCAATGGAGCAACCGGAGCGACACGGCGAGCTGGGGAGGACGATGACGAGGATGTCGTGGCGTCAAGAAGCCGCTTCAGGGCTTCCAGATGATGGTGGTCTCGGCGATCATGGAGGTGACGATGTAAGGGTCCATGTTGGACGCCGGCCGGCGATCCTCGAAGTAGCCCTTGCCGTTCTGCTCCGTCTCCCGGCCGACGCGGACCGAGGCGCCGCGGTGTTTCAGAGGAGGAGGAAGAAGAAGACGGAGGCGCGTA

Coding Potentia

Explanation	CPC Score
noncoding	-1.10001

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0183600.1	2	30675132	C	A
Osa02LNT0183600.1	2	30675199	A	G
Osa02LNT0183600.1	2	30675436	G	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0183600.1	osa-miR414	Translation	4.0	23.524	1	21
Osa02LNT0183600.1	osa-miR5083	Cleavage	5.0	20.431	1	20

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0183600.1	2	nan	Morphological trait	Panicle/flower	RG139	CDO686
Osa02LNT0183600.1	2	Hd7	Physiological trait	Flowering	R3393	R2511
Osa02LNT0183600.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0183600.1	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0183600.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0183600.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0183600.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0183600.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0183600.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0183600.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0183600.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus