>Osa02LNT0184100.1

AACAAAACTCAAACGTTAAGGTTTCACTTTGGCTGCTGACAAGACAGGGATAACTTCTGTTATGGGATTTGATGGTGTTTGGCCAAAATATGAAGTATGATCTCAGCTCACTAATTTAATGTAATGTAATGAAATAGAATCTTGTTTATTGTAACCACTATCGCTTTCACGATGACTCGTCGCTAGTAACAACTCCACCTAATAGTGATGTGACGCTCGTTTACTCGGAGCCTTCTTTTTGGTGAAGCTGGACGCCAACAGCACTTTGCCGTCCAGAACGTCTGGAGGGCTTTCAATTCGTAAGCTGAGGCTTCTCGCGGGCTGATGCTAATCAACCCAATCAAAAATGTGGCCCAAGCAGGGCCACCAAATAGCCGAAGGCCGCATCTTGTCCCCATTAGGTCTTCAGGTCATCAGACATTGCCGACGGTATACAGTGTGTTGTCAGAATGTCCTGTGTCGCAGCCTTCGCAGTTTTTGTCTCAAGGACAACAATCTGGTCATACTCCAGATCAAACTTCAAGAATTCATCCTTGCAATTTTCAACCATTGACACTAAGTTCTTCAAATTCTTCACAGGCTGACCATTGAAAGCAAGGACCTGAGTATTGACAATCTCTTCATAACCGATATTGATATCTGCTACAAGCACCTGTGATACCACCACCAGCTGTTCATCAGGTGATTGGGCCATTGCATGTAAATGCTTGACCAACAACTTGACAGGTGCATCATATTCATAGTCCTTTCCATACTCGGATCTAAGATATGGAACAGAAACTGCAGCAAAAACAAAGCCAGCAACAATGTAATATGATGGTGGCCTGCCCTTTACATGAGCTGCAACAAGTCTCTTATGTGTTGCTAGCTTTATTTTAAATTCATGGACTTTCGAATTGCGCAGGACTTTAACTAGAGCCTTCTCGCCAGTATATTTCTGGGAAACAAGATAACTGAAGCCAATGCGCTCGCCGTGCCTGAAAGGAACTGTACCATCATTGGCAATGTCAATACCATCGAAGCTAAGAATAATATCTGATGGTTGCAGGCATCCAGACTCAGGAGCAGTTGGTTCCACTCTTCGAACACGAACACCCTTTTGATCAGGTTTCATTCCCATCGCTTTGCGGAGATCAGGATTCTCCATTTTCTGCCATTCTATTCCAAGTATAGGGAATCCTGTATATTCTCCAGACTTTTCATAGTCTTGAATGAAATGCATAATAACTGGGGTGGGTATCACATAACCTATATTCTCTGCATCTTCATGTTTGAGAGATTGAAAAGCTATACCAACACATTTGCCCCTGTCATTAAAAGCTGGGCCACCTGAATTTCCTGAGTTAATAGCTGCATCTATCTGCAATCCTAGAAGTTCTGTAGAACCGTGAACATATGAAAGTATCTCTATCCTGGAGACCACCCCACTTGTCACAGATATTGTGTCTCCTCCAATTGGATAACCAACAACAGTCACAGCATCCTGAAGTGCTGGCAGTGATCCAAACTCAACAGGCAAAACTCCTTCCCAGAACTCATCATCATCGACAGTTAACAGCGCAATGTCGCACTCCGTCCCAATGGCGAGGACCGTGGCCAGGTACTTGGTGTCGGAGCCGCGCTTCTTAAGCTTGACCTGGGTGTAGTGCTCCACGGAGTGGGCGTTTGTGAGGACGCGCCGGCCTCCGATGATGAAGCCGCTGCTGCTGGAGCTGTACTGCCGCTTCCTCTGCCACGGCAGGGAGAAGTTGGGCTCCGTGTGCACGCAGAACACCTTCACCACGGCGTCCATGGACGGCACCACCCTCGCGACCTCGTCCCAGCCCACGGGTCCCCCCGCCTCCACCACCGCGTCCCCTCCTCCATTCGCCACGGGCTTCGCCTCCCCGCGGCGGGGCGGGGACGGCGGCCGCGACCCGTCCGCGTCGGCCGGGGCCTCGTGGCGCCGCGACTTGCGGCCCCGGCGGCCCGCGGCGGCCGGCGCGGGGTTGTCGGCGGCGGTGGAGGCCACGGGGGACGCGGGCGCGTGGTTTTCGGCGGCCGCCTTGTGCTTGCGGCCGCGCTTGCGCTTGCCCTTGGAGGTGGAGGAGGGATCGTCCATGGAGGCGGGCTAGGGTTTCGCGGCGCGAGCTTGGGC

Explanation	CPC Score
noncoding (weak)	-0.779028

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0184100.1	2	31098018	G	A
Osa02LNT0184100.1	2	31096653	A	C
Osa02LNT0184100.1	2	31098320	G	A
Osa02LNT0184100.1	2	31098436	C	T
Osa02LNT0184100.1	2	31100920	A	G
Osa02LNT0184100.1	2	31101112	T	C
Osa02LNT0184100.1	2	31100494	G	C
Osa02LNT0184100.1	2	31098665	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0184100.1	osa-miR5529	Translation	5.0	22.771	1	21
Osa02LNT0184100.1	osa-miR1861o	Cleavage	3.0	18.172	1	22
Osa02LNT0184100.1	osa-miR395t	Cleavage	5.0	8.162	1	21
Osa02LNT0184100.1	osa-miR395u	Cleavage	5.0	19.969	1	21
Osa02LNT0184100.1	osa-miR168b	Cleavage	3.0	22.272	1	21
Osa02LNT0184100.1	osa-miR395o	Cleavage	5.0	19.969	1	21
Osa02LNT0184100.1	osa-miR395v	Cleavage	4.5	8.162	1	21
Osa02LNT0184100.1	osa-miR395w	Cleavage	4.0	8.162	1	22
Osa02LNT0184100.1	osa-miR395w	Cleavage	5.0	19.969	1	22
Osa02LNT0184100.1	osa-miR1861a	Cleavage	3.0	18.172	1	22
Osa02LNT0184100.1	osa-miR1861b	Cleavage	4.5	18.172	1	22
Osa02LNT0184100.1	osa-miR1861d	Cleavage	3.5	18.172	1	22
Osa02LNT0184100.1	osa-miR1861e	Translation	5.0	18.172	1	22
Osa02LNT0184100.1	osa-miR1861f	Cleavage	4.5	18.172	1	22
Osa02LNT0184100.1	osa-miR1861h	Cleavage	4.5	18.172	1	22
Osa02LNT0184100.1	osa-miR1861i	Cleavage	4.5	18.172	1	22
Osa02LNT0184100.1	osa-miR1861j	Cleavage	4.5	18.172	1	22
Osa02LNT0184100.1	osa-miR1861k	Translation	5.0	18.172	1	22
Osa02LNT0184100.1	osa-miR1861l	Cleavage	4.5	18.172	1	22
Osa02LNT0184100.1	osa-miR1861m	Translation	5.0	18.172	1	22
Osa02LNT0184100.1	osa-miR2870	Translation	4.0	12.115	1	21
Osa02LNT0184100.1	osa-miR2863b	Cleavage	5.0	18.383	1	21
Osa02LNT0184100.1	osa-miR5497	Cleavage	4.0	16.274	1	21
Osa02LNT0184100.1	osa-miR5529	Cleavage	4.5	18.738	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0184100.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0184100.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0184100.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0184100.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0184100.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0184100.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0184100.1	2	nan	Morphological trait	Panicle/flower	RG139	CDO686
Osa02LNT0184100.1	2	Hd7	Physiological trait	Flowering	R3393	R2511
Osa02LNT0184100.1	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0184100.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus