\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0185500.3

GACTTCTAAAACCAATTTTACTCAAAATTTTTGTAGGTTATCTTAGTAATATGAGTTTACATTAGGGTTTGGAACTTCAAGTTGGATCATTTGTCCAAAAAAATGTAGGATTCCATCTCCAGCCAGCCACTTATAGAAATAGAATCACTGTCATTACTCGCCTCTAATCCTCGTCCGCCCTTAACACTGCGTCAGTATCTCCGCGCCATCCTCTGTAATCAGTATTGTGTGCTCAAACTGTGCTGACAAGCTGCCGTCTTCAGTCACCGCTGTCCAGTCATCGGACCATATAACTGGATTTACGCTCCCCACGGTTAGCATGGGCTCTATAGTAAATGTTTGGTTCAATGTCATACGGCCCCATTCATTGTTTCGGAAATGAAGCACCACAGGTTCAGCATGAAACACTTGTCCAACCCCATGACCGACGAACTGTCGAACTACACCAAACTTGAATTTATCTGCATGGTCCTGTATAGTTCGACCAATACGTTTGATCTCCACCCCAGGGGCGCAGATTGATATAGCCTTGTCGAGACATTCTCTTGTTACCTGAACTAATTTCTTAGCTTTGTCATCAACATTACCACATAGAAATGTAGCAGATGTATCACCGTGGTAACCCTGGAACCAAATACATGAGTACAATATATATATGCACTGGAGGGAAAAAAATCAGAAAGTGACTGTAGTCAAAGCAATATACTAATAATGAACCACACAGTAGACATGTAACCATATCAATAACTGTACATAGACAGATGGGACTAAGAATACACATAAAAATTCCATGCCTTATCTCGACCATGGGTTGCACAAATCCTAAACCAAGTGAAGGGTAAGTAATCACCAGCTGTCCAGCCACCATTGTCATACTTTGACATTTATGCAAATATAAGGAGGAGATGCATAGAAACACTCTCTGAAAAGAAAAGGAAAGGCTAGTTGTTTGTGTATGACCATGTAAGAAACCACTACTAAAAGAAAATATCCTCGAGAATATCATCGCAATCGACCAGAAATAGCAATATCATCACAATCCACCAGAAAAAGCAAAATATTATAACAATCTACTATTAAATAAGCACTGCGGTTGCTTCCCTTCACCCTTATTGTTGTTAGCAAAGGAAGCACTGCAGTATCAAAGCAATTAAGGGTAATAGTTTTGGGTGATCTACACATTGATGTTTGACTTACATTGAGATAAACAGTAACATCAATGTTGATAATGTCACCATCTTCAAGAGGACGAGAATCAGGTATACCATGACAGATGCACTCATTCACTGAGGTGCAGACACTCTTTGGAAAACCGCAATAACCAAGTGGCGAAGGGTATGCTCCATTATCTACTATCATTTGGTGCACCGCTTTATCAATCTCATCAGTTGTTATGCCTGGTTCTCTCCTGCACCTTAACAGTTACCAAAGGAATTATTTTCCCCCAAAAGGTACACTCTACAAGAGTCCCGGCAAACTTCAAAACTTGTGCAGCAAGCTTTCCAGAAGCCCTCATGCATTCGATCCCTCTCTCATCATGTATTTCAGGTCCATTGTGCAATCCAGGTCTTTGACGAGCATTGACATATGGTGGCCGCTGTATATGTTTGGGAACGCTTAGACGAGGAGATACTTTCCCAGGCCGTAGGCGTCTAGGGTTATCTTCCGGTTTGTCACTCTGACCTCTGTTGAAGAGGATATCCACCAGGTTGCAGAGCGTTCTCGTCGCCTGATACGCGGCCCGCCTGCTTCCTGGAGCGGCCCCGCGGAGGAGCGGCCTGGCGCTGGCGGAGAGGAGGCGGTCGCCGAGGAAGGAGGAGAGCAGGCGCGGCGACGACGAGGTCGCCATGGGGGCGAGCTGAGCGGAAGGGACTCCCTGACTGCGTGTGTGTGTGGCTTGGGGC

Coding Potentia
Explanation CPC Score
noncoding -1.11947
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0185500.3 2 32081997 A G
Osa02LNT0185500.3 2 32082541 A T
Osa02LNT0185500.3 2 32084366 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0185500.3 osa-miR5792 Translation 5.0 14.958 1 24
Osa02LNT0185500.3 osa-miR2873c Translation 4.0 16.083 1 21
Osa02LNT0185500.3 osa-miR395u Cleavage 4.0 13.025 1 21
Osa02LNT0185500.3 osa-miR5507 Cleavage 4.5 13.041 1 21
Osa02LNT0185500.3 osa-miR5521 Translation 4.5 14.659 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0185500.3 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0185500.3 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0185500.3 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0185500.3 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0185500.3 2 qER-2 Physiological trait Eating quality C370 C601
Osa02LNT0185500.3 2 qEL-2 Physiological trait Eating quality C370 C601
Osa02LNT0185500.3 2 qWA-2 Physiological trait Eating quality C370 C601
Osa02LNT0185500.3 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0185500.3 2 nan Morphological trait Seed C747 C1445
Osa02LNT0185500.3 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0185500.3 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus