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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0185700.2

GTAAATTCAGATACATCTTGTCCAAAATGGCAAGGAAAAGTACATATGTATAAGTTCAGATACATCTTATCCAAAATGGCAAGAGAAGTACACAAATTAAGAACAAGATGGTAACACCGACATAGGTTCCTACAGCAGCAAAATACAATACAGGTAGCAGGCACCATGGTTAAATAGGTTACATACAATGCTTGGATATAACTCAGACAACTAAAACCTATCGAGTGAATATCTCAGGCAGCCTGTCCGCCCAAGAGACAAGCCCACGGACTAATGGTTGGCCTACAAGGGCAGATCGATCTGGCGATTCTGAACTAACCTACTACTATACTCACTTTGAAAGGACTGTGTTCTAGTTACAGGTAACTGGCAGCTTCACCATCCTACTACTACTGTAATCACTGCTCACTTTGAAAGGACTGTGTTCTAGTTACAGGTAACCAGGTCTTCAGCTTCACCATCCTACAACTACTATGATCACTGCTCACATTGAAAGGACTGTGTTCTAGTTACAGGTAACTAGGCCTTTAGCTTCGATCACCATGGACCCGTCAGAGTCCTCCGAAGGCAAATTCTCTTTGCTGTCGGTCCAACTTGTCGGCTCATTCTCTCTAGAACCTCATTCTTTTGCTGCTCCAACATTTCATCCTGCACATTAGAATACATAAAAATAAGTTCAAATGCTAAAGCATAATCAAATGAATAGAGTAGCTACTGCCTACTAGTCCACTATCCTAAGGGAATAGAATTGTCAGGTCTTAAGGCACTTATGTTTGAATCATGTAAAGCCTTTCTTTTGTTTTCCTTCTCAGAAGTACTTACCATGAAAGGCGGACAAAACAAGGGCAAACCTCAAAGAATGTAATAAGACAGTGCAAAATGAAATAATCACAATTGTGGGTGTGGGTGCAATGCAACATTCATAAGTACTATTTTAGTTAGACTTGCAATTAAGATGCATGATAAGCTACGTATATTACAATTTATAAAATGAAATATCCTGTACAAAGAAGGCAAGCAACTAACCAGCAGTCCACCACCAAACTATTTAAACAGTTTAAAATGGAACCGACTTTGATTACTCTACCATGCCTTCAGTTTTGTTTAGAACTAACTTTCAAGCGTGGAACATATTTCATGGTAACTTGTCAGTTTAGAATTAGTTTCCAATTTCAAGAGTAGACTATAAAGTAAGGGGCTACACTAGAGTATAGCGTCAATACAACTTCTGTCACTAAAAGAGTGGTATTGTCTATGTTCATAGCTAAAAAGATACTCTTTTAAGGATGGAGGAAGTATATGAAAACACCTATAATATTTCTATTGGTAAGGACCTCACTTGGTCAAATGCTCTGGAGACTACTGCTAGAAACTAAGTGGACATGTGGCAAACTAGTGACAATTGAGAATAACAAAAACTGATAGTTTAAGATTTCAAAACAGCAATTTTTTTAGTTTGATGATTAGCAACTTGCCACCATGTGACAGTGACACAAGGGTCCCTCTGAAATCAATGGCGTATCATCAAATCCCCAATCTAAAGAGTGGCAGTTCACAGGCAAATGAATAATATGCCAGCATCAAATGCTTCATTGGAATTCCATATGTTTGAAAGTTTAAAGATTACCAAAGTGTACTACGTACTTCAACTCATGAAGAAGTATTTCCAAATTATAACGAACAAAACTCAAACTAGAAATGTAAACAGAACATGGAGAGTACCTGCTTTTTCTGGAGTTCATCGTTCAGCTCCTTAAGTTTTGCTACCTCAGCTTCCAATTCCATCATATATGCCTGTTTCCTCTGGCGCGACCTCGCGGCAGACTCCCTGTTCTTGATCATCCGCCGCTGTCTTCTCTCGACAACCTTCTCGATGCCCGGTGCCTTCCTTCCCCTCAGCCCACCTTTGAAAACGTACGGCACCGGCGATGGCGACAGCGACGACAGGTCCCCGCCTTCCATCTTGCCGAAGCCATTGGACGAGACCGGCCTCACCGGCGAAACCAACGACGCGGCACCACCACCGCCGTGTCCGACAGCTCCCGAGACCAGCCCATTTCCCAGCGAGAGCGGAGGCACCATCGGAGGGAACACATTGCTCTGACCGAACAACATCGGCGTCTGCTGCTGCGGCGGCGGCGGGGGAGGTACAGCAGCCGCCGTAGGAGTCGGCGCCGGCGGGACGGGCGGGACCGACATGTCCTCCCTCACCACGCCGGCCCGCACGAGGAACTCCTCCAGCGTGATCTCCCCGAGCGTCTGCTGCCGGTGCGCCGGCGGCGGGGGCTCCGCGGCGGCCGGCGCGGTGGAGGCGCCGCCGCCACCGAAGCACATCATGTCGCGCCAGACCTCGTCGACGGTCTTCTGGCTGAGCGTGCGGGGGAGGGTCAGCGACCCCTGCCTCTGAACGGGCGGCGCCCCCACCGCCGCGTGCTCCGCCGCCGCCACGGACGCCGTCGTCGCCGTCGTCGTCGTGGCGGCGCCGACGGCGTGCGACTCCTCGGCCGTCCAGATGCTGCGGAGGAGCTCGTCCATGTTCATCGACCCGAAGTCCTTCCCGACCCCGCCCAGCGTGCTCTGGAACTCGTCGAACGTGAGCGAGTACACCGACCCCTGCCTCGCCAACGGCAGCGGCGTCATCGGCGGCAGCTGCTGCTGCCTCCCGCTCCCTCCCGGAAAATCCATCTCCAAACTCCAACCAACCAATCCCCAACACCCCAGCACCAAACTCACCCAACCAAACCAATCGAAAACTCCGCACGGGGAGCAACCACCACGCCTGCTTCCCCGTAACGCAACGAGGGATCAGAGACGGGAACCTGAGGAGAGGTGGGATGTGGAGCTCTGGCGTTGGTGAGGAGGACGCGGGCGCCGCGGCGAGGCGAGGAGAGGAAACCGGAC

Coding Potentia
Explanation CPC Score
noncoding -1.11874
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0185700.2 2 32277908 C A
Osa02LNT0185700.2 2 32277597 A G
Osa02LNT0185700.2 2 32279356 A G
Osa02LNT0185700.2 2 32280117 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0185700.2 osa-miR5542 Translation 5.0 15.981 1 21
Osa02LNT0185700.2 osa-miR5827 Cleavage 5.0 10.653 1 21
Osa02LNT0185700.2 osa-miR418 Translation 5.0 9.368 1 21
Osa02LNT0185700.2 osa-miR426 Cleavage 4.5 22.362 1 21
Osa02LNT0185700.2 osa-miR426 Cleavage 5.0 15.807 1 21
Osa02LNT0185700.2 osa-miR530-5p Cleavage 4.5 15.84 1 20
Osa02LNT0185700.2 osa-miR1846a-3p Cleavage 4.5 24.771 1 21
Osa02LNT0185700.2 osa-miR1846b-3p Cleavage 4.5 24.771 1 21
Osa02LNT0185700.2 osa-miR2055 Cleavage 4.0 14.786 1 21
Osa02LNT0185700.2 osa-miR2095-3p Cleavage 5.0 20.419 1 20
Osa02LNT0185700.2 osa-miR395x Translation 3.5 11.389 1 21
Osa02LNT0185700.2 osa-miR5827 Translation 5.0 17.23 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0185700.2 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0185700.2 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0185700.2 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0185700.2 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0185700.2 2 qER-2 Physiological trait Eating quality C370 C601
Osa02LNT0185700.2 2 qWA-2 Physiological trait Eating quality C370 C601
Osa02LNT0185700.2 2 qEL-2 Physiological trait Eating quality C370 C601
Osa02LNT0185700.2 2 nan Morphological trait Seed C747 C1445
Osa02LNT0185700.2 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0185700.2 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0185700.2 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus