\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0185900.1

CAAAGGAAAGCATAATTTATAATTTGATCGATTTTACACTAAATGTCATACAAAATTCACTGAATCGACTTATGTCCATTGTATTAAAAGAAACAATTTACTTCCGAGAAGCCTGTCCTTTTAAACCTGAATTGAGCATAGTCTCGAAGCCAGCCTCAAATCCAGCGGTGTATGCTGCATTCTTCAGACTCGTCGTTACACTCTCCAAATCAATAGTGGCTTGTTCTTTAAAGCCATCAAATATAGAAGAAAGTTCTTCCTGCTTAACATTCAGTTTCTTTGATACCTCAGAAAGGAACAACGGGGACATGATGTCAAATACATCATTTACAAATTTCTCAACATTAGCTCCGTTTGTAGGTATCTTGCTCTGCGTCTTTTCTGCACCCTTGTTCTGAACTTTAGGCTTAGCCTTCACTTCAGGAAGACATGTTTTCTCTTTGGGCACATCATTTTGACGAGGAACATTTGTAGGTGTGACCTTCTCAATTGGTTCTGCAGAATTTGGGACACCTGATGGTACAAAATCTGCTAGATCAGGAGGATTATCCTTGCCTACAACTGGTGAAGCCTCTAAGTCTACATAAGCTGGTTGCCTCCCAATGGACATGAGAAACTTGTCCAGATTGCTTGAGCTGAGAGCGATTGTCACATCATTTGTCAGTGGATGGAAGTAGCAGCTCTGTTTTGACTTGAAACCTTGGTCCAGTAGTAGTGAGACAGCACTTGCAGACTCATTAAGTAGTGCAAATGGAGTAACACAGCCTAAGGGTACCTGAAGCACTTCAAGCAAATTTTCCTCAGGAGCCATCCGCAGACCACCTTTTCCCAAACCAAGACGCTGTGATAAAATTTTCATGTCAACTTTGGTGCCAGCAAGGGCAGAAACAACGTACAGCCTATGCTTTTTGTCCTTCAGTAGCAAATTTTTACTCAAAGCACCTCCTAAATGCCCAACATGTTTGGCCTGTTCCTCCACCGTCAACACAACCGGGTGATCGTAGCACGAGAATTCAATGTTGAGCTCCTGGAGTCGCGCGAGGAGCTGCTCCTTGGTGTACCCCATGGCCCTCGCGGCGGCGGCGGCGGCGGCGGAAGGAAGGAAGGAGACGAGTAGGGCAAAGGCGAGGCTGTCTCGGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.873315
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0185900.1 2 32329360 G A
Osa02LNT0185900.1 2 32327558 G A
Osa02LNT0185900.1 2 32327926 C T
Osa02LNT0185900.1 2 32327976 A G
Osa02LNT0185900.1 2 32328024 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0185900.1 osa-miR169f.1 Cleavage 5.0 17.696 1 21
Osa02LNT0185900.1 osa-miR169g Cleavage 5.0 17.696 1 21
Osa02LNT0185900.1 osa-miR169h Cleavage 5.0 17.696 1 21
Osa02LNT0185900.1 osa-miR169i-5p.1 Cleavage 5.0 17.696 1 21
Osa02LNT0185900.1 osa-miR169j Cleavage 5.0 17.696 1 21
Osa02LNT0185900.1 osa-miR169k Cleavage 5.0 17.696 1 21
Osa02LNT0185900.1 osa-miR169l Cleavage 5.0 17.696 1 21
Osa02LNT0185900.1 osa-miR169m Cleavage 5.0 17.696 1 21
Osa02LNT0185900.1 osa-miR408-5p Translation 4.5 22.599 1 21
Osa02LNT0185900.1 osa-miR415 Cleavage 4.5 22.474 1 21
Osa02LNT0185900.1 osa-miR395w Cleavage 5.0 14.349 1 22
Osa02LNT0185900.1 osa-miR169r-5p Cleavage 4.0 17.696 1 21
Osa02LNT0185900.1 osa-miR1869 Translation 5.0 16.635 1 24
Osa02LNT0185900.1 osa-miR1874-5p Cleavage 5.0 17.51 1 24
Osa02LNT0185900.1 osa-miR1881 Cleavage 5.0 8.755 1 24
Osa02LNT0185900.1 osa-miR2095-3p Translation 5.0 18.054 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0185900.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0185900.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0185900.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0185900.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0185900.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0185900.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0185900.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0185900.1 2 qEL-2 Physiological trait Eating quality C370 C601
Osa02LNT0185900.1 2 qWA-2 Physiological trait Eating quality C370 C601
Osa02LNT0185900.1 2 qER-2 Physiological trait Eating quality C370 C601
Osa02LNT0185900.1 2 nan Morphological trait Seed C747 C1445
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus