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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0186000.1

GTAATCTATGTCCTGAAGGCATCAAATATTCCAGGGAGATTTAAGTTATCACCTATTTGCAATCATAATGCACAACACATCTAAACTGAACCATGGTTAAATTACATAAAGTACAAGCAGCTCCTCGCTAGCGTGAAGTTCGAACTAACATGACAAAACTGTTTTCCCCAATGTAACAACATTTGCAATTTTGGAGTCACGGTACAGCTCAAGCGAGCTAACCTAGATGAGCTTCTTCTTCTGGAAGTACCCTTGAAGGTGCCACAATTGCAAAATTGAAACCACAATGCAGACGCTTAGTGACAAAATACTGAACCAGGCTACCCTAGCGTTTGTTTTCTCGCTCACTGTTCGCATCTCTGCTTCCCTTGCTTTGAGATATATCATGTTCTGATGGATGGATTGTACTGCCACTTCAAGTTTTCTAAGCTCTAGTTCTACACCCTCAATTTTTTCCTTCTTAGCGATAACATCCCAATCCTTTGCTGCAATTCCAATCTTCCAATCAAGATTAATAGATATTCCTGACCCTTTCTCTGCGCTATCTATCCAGAAGCATGCAAGATAGTTTCCTGCTTCTGAAGTTGTGAATGCGAACTGACCAACCGTAGCATTTTCATTGTGATGTAAGGTGTTCCCATATGGTGATGTAACCTGCACCAAGCATAAGCATTTGCAGAACTATAACAGCACAAGTAGATAGTAATTCATTCAACAAATCATGTAAAAGCAAATTGCTAAGCTTCTCGAAGAAATGCTAAGCTTGAGAGGATTGGAGTAGCATCGTTTACTCCATTAGTGGACTGCAGTAACTGCAGATTGATACTCGCACAGTAAAAAAAAAAAACCATATTCTTGATTCGAAAGCTGCGAAAAGAAAAAACATAAGGACTGTTCAAAATGGAGCAAACACAAATAGTATGCTTAGTGTCTAATCTAGCCAGTACTAATTCATGGATGAAAATAGATCTCCTAATGAATTAATATTATACTTCACATAAATAAAATTACAATCAGTGGACATAAATTGGAGTAAAGACTAAAGAAACTAGTATATAGCGAGTTGCATGGCCATTTAACCCTAGTAACCCTTACAATCTACTCCATCCATTTGCCTTGGAATTGGAAATTTTAGTCCCATGAAGTTCCTCTTGTGCATTTTCAAGGAAAATAATATTAAGAAAGAGTTGAGATATCACCTGCTCACTTAAGTGGGTTCTACAATTAATAATTTATATGACATTACCATTATCTCACCTAAGTCTATCTACTTATTCAATCTTATACGGCACTCGCAATTTATCAACCATATGTCTACACGTTAGTCTATTTATTCAGTATGTCCCCTTGTTTGTTCGAACGCAAAAAGCATGGCAACACACTGTCATATTCATGCAAATGATTCCGAATAAAAAGATACACATATGGTACCAAGTCATTACAGTATTAATTTCACATCACATAATAACATGATTGCATCGTTGTCTTCTCATTATTTCGCATCGATGCGATTCTTATTGATCACCTTTTACTTCCCACAACCCATGGAGTTTCTTACAGAAGTCGCTAGAAAAGCAAGTGTGTGATTCTGTAAGATGAATCACCTTGTATTCTGTTACGAGTGACATCCTGGACAGAAACCACCGCAATTTAGACAGAAGGAATCGACGCGGTTTGTGGATCATATGTAAGCATACCCTGCGTCATCAATGCGAATCATACCAATCCACTTGACGCATCAGCCAGTTATTCTAGAATACTATCATCATCATTCCCTGCGATGCAAATGGAATCTAGACAGAGCACTAGATCCTAGAGAACAACAAATTCCTAGCAGGTTACACAAAGAATATATGATTCCAAGTTTCAGCTCCCATCGCAATCCGGTGAACACTAGGCACAAACTTTTTCTGTCTTTCGCGAGCACAGCTGCACCAATAACACATAATCCCTCGCACTCAAGGACTCAACCAGTTCAACGATTATTCCAGCACAATATAATGTGCGCTAAGCATCTCTAAACCCGCAGCAAAACCAAAAACTTCACGCCACCGCTCCGTTTCACGGAATAATCATCCATCTATCGTTCTACCATGGAGTTGACCTAATTCGTCCAAAACTACCGCAACCTAGATCGGAGCCCATCCAAAAATTCCAAAACAACGGAAGCGCCTCACTGCATCATAGAATCCGAAGCGAGAGACGGCTAGAAATGTGGGGAATTACCTTGACGGCGATGGTGGGGTGGGAGGAGGGGTGGGACTCGTACATGAGGGCGTAGTCGGCGAGCACCACCACGTTGGACTGGATCTCCTCGGACACGCACTTGGTCCCCGACTGCGGCAAGTCCAGCCACACCGCCTCCGCGCAGAGGAGGAGGCACGCGGCCGCTATCACCGCGGCCGCGACAGCGAGGGTTAGCGCCGGAGATGTAGCCGCCACCGCCGCCATCCCCCGACGACCTTGGGATCTCCGCCGCCTTGCGGGGAGGGGGAGCTGGAGCAGTGGCGGAGTGGGAGAGAGCGT

Coding Potentia
Explanation CPC Score
noncoding -1.26671
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0186000.1 2 32353831 A G
Osa02LNT0186000.1 2 32355255 A T
Osa02LNT0186000.1 2 32355804 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0186000.1 osa-miR5804 Cleavage 4.5 13.446 1 21
Osa02LNT0186000.1 osa-miR393a Cleavage 4.5 13.971 1 21
Osa02LNT0186000.1 osa-miR162b Translation 5.0 14.884 1 21
Osa02LNT0186000.1 osa-miR393b-5p Cleavage 4.5 13.971 1 22
Osa02LNT0186000.1 osa-miR814a Translation 4.5 12.703 1 22
Osa02LNT0186000.1 osa-miR814a Translation 5.0 15.502 1 22
Osa02LNT0186000.1 osa-miR814b Translation 4.5 12.703 1 22
Osa02LNT0186000.1 osa-miR814b Translation 5.0 15.502 1 22
Osa02LNT0186000.1 osa-miR814c Translation 4.5 12.703 1 22
Osa02LNT0186000.1 osa-miR814c Translation 5.0 15.502 1 22
Osa02LNT0186000.1 osa-miR1427 Translation 4.5 14.8 1 21
Osa02LNT0186000.1 osa-miR2871a-3p Cleavage 3.5 16.245 1 21
Osa02LNT0186000.1 osa-miR2871b Cleavage 3.5 16.245 1 21
Osa02LNT0186000.1 osa-miR2922 Translation 4.5 9.685 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0186000.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0186000.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0186000.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0186000.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0186000.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0186000.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0186000.1 2 nan Morphological trait Seed C747 C1445
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus