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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0186100.1

CCCCTTCTCTCTATGTCACAGATACATGAGTACACAACTACACATGGTCATATCACCGATCTCACATTTTGGCGCATGAAAAAAAGTTGAAAGAACACGTAGCATACAATAAACTGTTAAATGCATGAACAATAAAACGATGTACCCGTTTTTATAGACAATATTACATTTTCTGCATTGTTAAAAATAAATTGTACGAGTTATCTTTTGGTAAAAAACTGTACAACTTTTTGTTTTTTGCATATTATGTAAATGGGATTACGAGTTATCTTTTGGCCAAAAATTATACAAGTTATTTGCATATTATTTAAATGGGATTTGCGAGATTTAAAGTGACTGAAATTACTATGAATTTCACTCACCTTCAATCGAGCACTGGATTTTGGGAGGGAGAAGGGGTAAATCAACTGCGACGGCAATAGCGACGACAAACTCTTCTTCAATAAATGCACAGCGACGGTGACGAGGTTAGAGTTGAGGGTTTATTTGCAATCCTGTATGGCTCTCCTGTGGCCACTTCAATAAAAGGTACAGCAGCAGTATATTTGTTTGTGCACTAGAGCCACTCGGAAACCGAACGCCACGAGGTTCCGCCGGTCCGCGCCGCCAGCTCCGCCGGCATGTGGATGGCGCGTGCGGCGTAGAAGGGGGAGAGTTGGGGGGGAGATTTGGGATTGGCGGATAGCGGATGCCGCCATGGCGGCCGGCCTCGAGCCCTCGAGCCCTCGGCTCGCTCGCTTTGGAT

Coding Potentia
Explanation CPC Score
noncoding -1.24771
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0186100.1 2 32343406 A T
Osa02LNT0186100.1 2 32343811 T C
Osa02LNT0186100.1 2 32343995 T G
Osa02LNT0186100.1 2 32345041 G A
Osa02LNT0186100.1 2 32346130 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0186100.1 osa-miR6256 Cleavage 4.5 21.96 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0186100.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0186100.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0186100.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0186100.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0186100.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0186100.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0186100.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus