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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0187100.1

ACATCAAGAAAATCTACACTCAGATTATTCTAACGAATCGTATAATGTCAGGGAGCACACAGTTCCACTATATCAGACCGGATGATCGTTACATTTGTTATGGAGCAGTAAAAAGAAACACAGGTACAGAAGGTATCTACAAGGTTGATGATGAGGGGAGGTGAAACTAATTTGACCAGACATGCACCAGGCCTTTGCTGTTTCCAGTGTAGATTTCGTTGCGGTCCTCGTCGTAGAATAGTGCGGTGATGTCCTCAAGAGCATCAGAAACAGTGCTCCGAATGGTAGATCTGCTGCTGTCACCTCTTTTTCGAGGAGCAATTGTGAGAGTAGGGTCGAGGGGGGAGATCTTGGCGACGCACTTTCCCGTGAAGATGTTGCTCATGTTGATTGATCCCGTGGGGGGAGCTATGCCCTCGCAGCCGCCACTATCTCTGACCTCCTTTGAAGCTTTGCAGTATGAGATAATCAAGTCCTGGTCGGCAGTGATGTATATATTATTGGTATTGCAGTTAGAATGCCACAACTCATGATCATCAAATGAAGTAACTAGCTCTCCACGGAAATTCCATGCTGCAACTGTCCTATTGCAGAATGTCAGGAATAGATTATTTTCGTAGAGGAAGATGAATGCCGAAGGAGTCATGAATTCGGTTTTGTTGACCTCAATCAAGTTGGAGTTTCTAACATCAATAATCTGTAGGTTTTCCTTGTCTTGTTTCACAAGAAGTTTTTCATTAAACTGCTCGATGAAGTCAACCTTTCTGCTCCGATGAAGCAACTGGGTGAAGGTTTTCAGTGGGGTTCCATCCTCAATTGAGAGTATCTTTAATGGAACATGATTAGCTGACTTCTGATAAATTACGAGCATGATTCCAGGACTTATTTTGATTTCCTGGATGTTCTTATCACATATAGAATACAGAAAGTTGTAGTTCTTCAGATCAAAAACTTTGTAAGTGCTATCCTGGGCTGAAAAAGTCAGTACTTTGCCATTAACATCATCAAACTCAACAAATCCAGGGTATTTCAGTGATTCCGTTTCAAATAAAGGAAACCCATCATTCAATTGGCCTCTTCTAATGTACTCTATTGGAGTTGTTCTGCACTTGAGCGAGCTGAAACGATCTGATTCATAAACTGAAACGGTGATAAGGGATTCATTGTTTTTATTATAAAACAAACTCCTAATCACTTCATCAGGACTTATATTCAAGTAGCATATGCGCTTGTTTGTTGCCCGATTAAATGCACCGCATAGTCCAGATTGGGCAAGTGCAAATATGACATCCTTTGCTGCAACAATCTCAATAATTTTGGTTCTGCTCCACAAAAATGGCAGCTGAACAAGAAAATGGACTTCATCATCATAGGTGTCATACTCTTCCTGCAGCTGGAAATTCCGGAATTTCTCGGGGCAGGAGAAGGCGGAGGAGGAGGGCGCCGCGGGCCGCGGCGGCCGGCGGTGCCCCCCGCCGATCTCGCGGCGCGCGACCTTGTGGACGGAGTCGGACGGGTCGCGGCGCGGCGGCTTGCGGCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.95326
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0187100.1 2 33132332 A C
Osa02LNT0187100.1 2 33133371 A C
Osa02LNT0187100.1 2 33133503 A C
Osa02LNT0187100.1 2 33133640 G A
Osa02LNT0187100.1 2 33132015 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0187100.1 osa-miR5542 Translation 5.0 14.831 1 21
Osa02LNT0187100.1 osa-miR168b Cleavage 3.5 17.156 1 21
Osa02LNT0187100.1 osa-miR395w Translation 3.5 17.091 1 22
Osa02LNT0187100.1 osa-miR2863b Cleavage 4.5 16.206 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0187100.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0187100.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0187100.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0187100.1 2 ss2 Physiological trait Source activity RM240 RM213
Osa02LNT0187100.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0187100.1 2 sk1(t) Morphological trait Seed nan nan
Osa02LNT0187100.1 2 nan Morphological trait Seed C747 C1445
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus