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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0187200.1

GGTACTGAGAATCAATTGTAAAATGCAATGTCTACGTAGTACAACACAGCCGCGACACGGATGGAGAGAAAGAATTGCGCAGTAGCAGCAGCATCGACGAGTTTTGGCACGCCCGGTCACTCACTCCGAGCAGCGCCACCGCCACGGCAGAGTGGCAGCGGCAGCAGCTCGGTGCTCCGGCACATCAAAGGACCAAACCAGTCACGAACAAAAGGTCAGGCCACGCCGTGCCACTGCGAACCTGGCATCTCGTCCTCAGACGAGACGTCGTGCTTCGACGACACCTTCTGCTTCCGGCCGTTCCTCCTCCGGCTGGCCGTGTTCCCGCTTCGCGTCTTCGCCGCTTGTTTAGCATCACTCTTCCCGAAACAAAACCCTGATTGACTCTGTCCAGAACCGACTTCGCTGGCTCTTGGAGGCTTCCCAGAGTCCATTGCTGATGAACCACGCTTATTAATACCATTACATGATGGCGATTCTGCCTCAGTAGCTACTGGAGGCGGTGGAGACGGTGACATCGAAGGGGAGGTTGAGGATGTTCGAGTCTGGCTTTGGGCCTGGGTATGGTAGCACTTTGAGGGTCCATTGCAGAAACCCGAATCAAGATCAGCTTGGAACATGTCTACGAATAGCTGCTGCAGTTCTTTAAAGCTCTCCTGCCTCGTTGGCCGTGCCTGGCTCATCATCTGGGCCATCTCACCAATGAAGTCCCCCATCCCCTGCAGGTTGTCATCGTCATTGTCGTCATCATCATATACCCCCACGTCGTAGAGGAACCGCTTGTTTGAGTCTGAGAGGACGGAATAGGCGCCCTGGATCTCCTGGAACTTCTCCTTGGCTTCCTCCATGTGCTTTGCACTGCTGGAGGATGAGCATTTGTCCGGATGCCATCTCATGGCGAGCTTCCGGTACGCGAGCTTGAGGTCGGCGTCGGAGCACTCCTTCTTGAGCCCGAGCACGGCGTACAGGTCGCCGCCGCCGCCGCCCTCGCCGGCCGCGTCCCGGCACTTCTCTCCCCCGTCGGCCATGTCGTCACCCCCCGTATCCGCCGCCGCGCCTCAAGCACGGGCAGGCGCCGGCCGGCCGGGGAGGCCGACGACCGGAGGAGAGGAGAGGAGAGGGAAGAGAGAGGAAGCAAAGCAAAGATGGCGCGCGCGCGCCTCGTCCGCTTCGTCCCCCTTCTTCTCCTCCTTCCCTTGCCTTCTCTCTCTCTCTCTCTCAGGTCGCTC

Coding Potentia
Explanation CPC Score
noncoding -1.05747
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0187200.1 2 33170519 C T
Osa02LNT0187200.1 2 33171628 C A
Osa02LNT0187200.1 2 33171975 G C
Osa02LNT0187200.1 2 33173594 G A
Osa02LNT0187200.1 2 33174509 T C
Osa02LNT0187200.1 2 33174742 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0187200.1 osa-miR160c-3p Cleavage 5.0 22.526 1 21
Osa02LNT0187200.1 osa-miR160f-3p Cleavage 5.0 22.526 1 21
Osa02LNT0187200.1 osa-miR166j-5p Translation 5.0 24.679 1 21
Osa02LNT0187200.1 osa-miR1879 Cleavage 5.0 10.232 1 24
Osa02LNT0187200.1 osa-miR2097-3p Cleavage 4.0 17.46 1 22
Osa02LNT0187200.1 osa-miR2926 Translation 4.5 15.078 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0187200.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0187200.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0187200.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0187200.1 2 sk1(t) Morphological trait Seed nan nan
Osa02LNT0187200.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0187200.1 2 ss2 Physiological trait Source activity RM240 RM213
Osa02LNT0187200.1 2 nan Morphological trait Seed C747 C1445
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus