>Osa02LNT0189700.2

TTCGGGCAGGGAGGCTGGTCATTTTTCTTTCATTAATTTTCCTCAGTCACTGATGCACACAGCACACCAGGCGTGAACTGATGAGTACATTGGTATCTTGGTGATGAATCTGAATATTTCACATTGTACCTTTCTACTACTATACAATATATAGGAAGAATGAATGAGAAAATAACTATTTTTGATCAACCAACCCCTCCAAGGGAGACAGAAAACAGAAAGAACCACGTAGAACAAGGTACGCAAATGGAGAGGACTATCACGACAATAATGTAACAACAAAATGGCACTGACCGAGCAGTACTATAGTCCGGCAGGAAAATTGCTCACTTGGCCTTGTTCCAGTCTGTCCTCACCATTCACTTTGTATGACATCCGGATACGCATTGCAAGTGGTTTCTGCCCATGTTGGTTATTGGTGACACTGAACCCTTGAGTAACTGAACCATTGCCACTAGCTGGAACAATGTTGCCACTAGCTGGATCCAGTCGCAATTGGATAAACTTTGGAACAGCTGCCTGAAAAACAAAATCCGTATAAGAACTGGATGTCAAATTTGTAAAAGTAGCATGGACGGTAGTCTCGTGTGGTTTCTCAGGCTGCTTTTTGAAATTGAAGTTGATCTTCAAGGTTGCACTCTGGAAAGCTGTTATTGATGAGTGATTAACAGGTCCAGAAACAGATGTATTTGATGGCAGACCATCAAGCAAATCCATATCTTGAGGTACTGCAGGAGCGGATTTGGTCCCAGAAACAGATGTACTTGATGACAAACTACTGAGAACATCCGTAGCTTCAGGTACAATCGCACCGACTTGGGCAGGAGTAGAGTCTGCTGCTGGCGGGCCATTCTGTGATGGAGATGATCCGATAGATAGAAGATCAATAAGAATATCTGTGCTTGCGGATGAAGGTGCAGCTGCAGGTGATGAACTTATCCCACCAATACCCAGAAGGTCTTGTAGGAAGTCGTTAGGTGCTGTAGTGGTAGAAGCAGTGGTAATGGCTGGCACATCATCAGAACTTAAGTCAAGCAAATCAACTAAAGGACTGGTGGCAGGTTTTGCTACACCATTTGGAAGCTTAAGGCCTCCGGGAGTGACTGCTGGGGTAGGCTTATCAGCTGCAAGAGTTGCTTGTGTAGCACTAGCCCTCCTCAGCAAATAACTAGCTTCATCCAATGCAGGCATACGCTCAAGCAAAGATGGCCTGATAGACTGATGTCTTTGTATGATGGAACTGAATTCAATTGATCTTTGCTGTAGTTCAAGCACAATATTCTTTTTATTCTGGGAAACTATTTGCTTTATCCTCTCTGATGTCGATGGAAATCGTGACGAGAGCTTCAAAAGAGCCACAAGACACATAGCTCGAGTTGTCACATCAGCAGAGTAACGGTTAAGAGCGAGTTGTACAGCATCCACAGCATCAGATTCTGTTACCGTAATAGGTTCCTCCCCTTGCAGCATGCCAACATTGTTAACTAGCATTTCACCATATTCACCGATGCACCAAACAGCCACTCTTACTGATCGACAAATGCTTGTAGAGCCATGTATAATAACCTCACTGAATATCCTTGAAGTTCTGATGCATTGCTTATTACAACAACGAGGGCATGCCACACATCATCCTTCACATGATTTCCAGCCAAGGATAAAACCTTGAACATCTGATCAAGGTACCATAACTTCTCTTGAGAAAACTTTTCAACTATTGAGCATATCTTGGCAGTGAGATCTTCTTTGAAATCCGGATCAGCTGAATCTAAGTAGTCGACAAGCTCTTTAGTCAAAGGCTTTACATTTGTATCGTTGACTAACAAAAAAACAAGTTCAAGGGCCCTCTTGCGAATAGAAGCATCTGCATCCTTTACACACTCCAATATTGTCGTCCTGTGTCTCTGTACTGCCTGTGTATCTACAGTAATGGCCCTCATAAGCATGTTCAGAGCAACGTATCTTATATTATTATCACGATTCGACAAGAATCTACCCAAAATATTGATCGCAAGCACACGTAAACCACTAGTAGCTTCAATACCCATTATAGTCTGAACACATTCATACAGAATGGCATTAGCAGCATTCTTATTTGACTCATTTTTCGTTGCAACCTGAGCAAGAATATCATTCATATATTCACTGCAGTCTGCATCTCCTTGACCCAAAATGCGCATCAGTTTAAGAACTCGAATATGCAAGAAAGGGTCTGATATGCCAGCAACGTCATACTCAGGAGCATAAGAACTATTGGAGACATCTCTCAGTATGCGCACCAATCCTTCAACGCAGTTCTTTCTCAGGTACTCTAGTGCATCTTTGCTGGCTTTACACAGTTCCGTGCATAGTTGAACTGCAGATATCAGAATCCCATGATGTTTCTCCTTCAATAACGATGAAGCAAGACCCATGAAGTTTTCTGCCAAGTCTGGGACTTTTCTCACAATCCTTATAGCACACAAAGCAGCCTTTTTCTTTGTGTTAACGTCCCTGCTACGCATCAGCCTCTCCACTTCAGGCGACAGATCCCGTGCCATTTCAGCGGAGCAGATATTCCCAAGCGCACACAATGCAAGCCCCACGATGAACTGGTTCGAGTGATTGAGATCTCTGCCCCCCAAATTAATCATGTTTGAGGGAGTTGGTGACGAGCATGAGCACCTCCTGCCGCTCGTCGAGGAGCAGCATGAGGCCGAGGTAGCCGATCCGCTTCTCCGGGTATCCCGCGGCGGCGATGAGCTTGAGGCACTCCATCTGGCCGAAGTGGGTGGGGTATCCGAGCATATGGATGAACATGAGCTTGGCCATGTTCCGGTGCCGGATCTCCTGCTGGTTCTCGCCGATGGCCTCTCGTATCTCCGCGCACTCCCGCCGCACCACCGCCCGCTCCTCCGCCGCCGTCTTGCACGCGCGTATCGCCCGTATCATGTCCCGGAGGCGCGTGCCGGAGGAGAAGGGGCCCATGGCGATGTCGGAGGCGAAGTCCTCGACGATCTTCTCGACGGTGTCCATTGCCGGGGGGCGGGGATCTCGTGGAGGGGGGAGGAGGAGAGCTCGCGTGGATCTGGCTCCCGCGCGAGGTGGTTGGAGCGGGAAGGCGAGGCGAGGCTGGCAGAGGAGGAGGACGAAGGCTCGCCTTGGATGGATCTGAACTTCTGAAATCTGAACT

Explanation	CPC Score
noncoding (weak)	-0.947739

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0189700.2	2	34336842	T	C
Osa02LNT0189700.2	2	34337081	A	G
Osa02LNT0189700.2	2	34338376	C	T
Osa02LNT0189700.2	2	34339354	C	T
Osa02LNT0189700.2	2	34339356	C	A
Osa02LNT0189700.2	2	34339371	A	G
Osa02LNT0189700.2	2	34339439	G	A
Osa02LNT0189700.2	2	34339892	C	G
Osa02LNT0189700.2	2	34339899	T	C
Osa02LNT0189700.2	2	34339982	A	G
Osa02LNT0189700.2	2	34340131	G	A
Osa02LNT0189700.2	2	34341291	G	T
Osa02LNT0189700.2	2	34341607	T	C
Osa02LNT0189700.2	2	34343197	C	T
Osa02LNT0189700.2	2	34342712	T	A
Osa02LNT0189700.2	2	34343301	T	G
Osa02LNT0189700.2	2	34340969	A	C
Osa02LNT0189700.2	2	34342634	A	G
Osa02LNT0189700.2	2	34337286	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0189700.2	osa-miR5530	Translation	4.0	22.346	1	21
Osa02LNT0189700.2	osa-miR5543	Cleavage	3.0	11.282	1	21
Osa02LNT0189700.2	osa-miR5543	Translation	5.0	11.02	1	21
Osa02LNT0189700.2	osa-miR5802	Translation	5.0	19.541	1	24
Osa02LNT0189700.2	osa-miR426	Cleavage	4.5	18.759	1	21
Osa02LNT0189700.2	osa-miR530-5p	Translation	4.5	20.997	1	20
Osa02LNT0189700.2	osa-miR530-5p	Translation	5.0	17.671	1	20
Osa02LNT0189700.2	osa-miR530-3p	Cleavage	4.0	18.198	1	21
Osa02LNT0189700.2	osa-miR530-3p	Cleavage	4.5	16.493	1	21
Osa02LNT0189700.2	osa-miR1441	Cleavage	4.5	15.538	1	21
Osa02LNT0189700.2	osa-miR1441	Cleavage	4.0	12.528	1	21
Osa02LNT0189700.2	osa-miR1855	Cleavage	4.5	21.311	1	21
Osa02LNT0189700.2	osa-miR3979-5p	Cleavage	4.0	10.548	1	20
Osa02LNT0189700.2	osa-miR5073	Translation	4.0	9.309	1	23
Osa02LNT0189700.2	osa-miR5150-5p	Translation	4.5	20.034	1	24
Osa02LNT0189700.2	osa-miR5511	Translation	4.0	24.821	1	21
Osa02LNT0189700.2	osa-miR5519	Translation	4.5	12.957	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0189700.2	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0189700.2	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0189700.2	2	ss2	Physiological trait	Source activity	RM240	RM213
Osa02LNT0189700.2	2	Hd7	Physiological trait	Flowering	R3393	R2511
Osa02LNT0189700.2	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0189700.2	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0189700.2	2	pl2.1	Morphological trait	Panicle/flower	RM250	RM208
Osa02LNT0189700.2	2	nan	Morphological trait	Shoot/Seedling	RM250	RG256
Osa02LNT0189700.2	2	gn2.1	Morphological trait	Panicle/flower	RM250	RM208
Osa02LNT0189700.2	2	gw2.1	Morphological trait	Seed	RM250	RM208
Osa02LNT0189700.2	2	sn2.1	Morphological trait	Panicle/flower	RM250	RM208

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus