\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0190100.1

AGGCTCCCAGCCACTCAGGCTCAGCCGCCCACCAGCCAGCGCCGATAGCCGACCGCGCCCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCCACTAGCCAGGACTACCCAAGGAAAAATTCCTGCCTACGCCACTGGATGCCGGTGTCACCGGCGCCAAGCAGACGAGCATGACGGCTAATAAGGCAACCGCCTGATGCAGTGTACTAGTGGTAGGAGAAACTCTTTTAAACACTCGGGTGGACGTCCACTCGTTTCTTGCATGTCATCTAAATAGTTATGAAAAATTTTCAAAAAAATTGACATGATAGGTTAATATGTAATACTCCCTCCGTCCCATATTATAAGGGATTTTGAGTTTTTGCTTGCAACCTTTGACCACTCGTCTTATTCAAATTTTTTGAAAATAATTATTTATTTTATTTGTGACTTACTTTATTATCTACAGTACTTTAAGCACAACTATTCGTTTTTTATATTTGCAAAAAAAAATTTGAATAAGACGAATGATCAAACGTTGCAAGCAAAAACTCAAAAATCCCTTATATTGTGGGACGGAGGGAGTATATCACTTCACAAAC

Coding Potentia
Explanation CPC Score
noncoding -1.12117
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0190100.1 osa-miR5799 Translation 4.0 18.692 1 24
Osa02LNT0190100.1 osa-miR426 Cleavage 4.0 11.476 1 21
Osa02LNT0190100.1 osa-miR818a Cleavage 1.0 14.786 1 22
Osa02LNT0190100.1 osa-miR818b Cleavage 1.0 14.786 1 22
Osa02LNT0190100.1 osa-miR818c Cleavage 1.0 14.786 1 22
Osa02LNT0190100.1 osa-miR818d Cleavage 1.0 14.786 1 22
Osa02LNT0190100.1 osa-miR818e Cleavage 1.0 14.786 1 22
Osa02LNT0190100.1 osa-miR1436 Cleavage 3.0 16.373 1 21
Osa02LNT0190100.1 osa-miR1439 Cleavage 5.0 15.544 1 21
Osa02LNT0190100.1 osa-miR1877 Cleavage 4.0 22.659 1 24
Osa02LNT0190100.1 osa-miR2104 Cleavage 4.5 21.598 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0190100.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0190100.1 2 nan Morphological trait Shoot/Seedling RM250 RG256
Osa02LNT0190100.1 2 gn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0190100.1 2 gw2.1 Morphological trait Seed RM250 RM208
Osa02LNT0190100.1 2 pl2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0190100.1 2 sn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0190100.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0190100.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0190100.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0190100.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0190100.1 2 ss2 Physiological trait Source activity RM240 RM213
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa02LNT0190100.1 osa-MIR818e 83.913 230 3 225 1.32e-55 213
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus