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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0190200.2

TTATCATGGGATGCTGAGTGCTACGACCTACATTGGGAGGCTTATTCCGTTATTAGGAAGCTGTGAATGATGCATTTCTCTGGGGACTGCATGGTACATCATCAGCTATCTAAATACAAGGCACAGTTTTTGCCCATAAACAATCCTGTTGATTTCTTGCAACTGAATGGACAACGGAGAGACAGCAATATTCCCTGAGTGTGTTTTGGAGAAAGCATAGTGATGATTAGTACCAACGCACATTCAAGGATCATAGTCATGGTGGTGTCTGAACTTCTGATCCACATTTCTCTGTTCCATGTCAAGCAAGCTCTGCTTCTCCTCCGGATTGGCATCACCTTTATCCCAGGGGTGTAGCTGGTATCTCCTCAGCATCTCCAGCTTCTCAGCGACCTCCTTCATCATCGGTCGTTCCTCACCACTCATGCTCACACATCGCATCACGAGCCGTCATGAAGCAAGACACGAGGCTCCTGTCTTCCTCTGATCCGCCGAAGTAGAGTGCCTTCTTCCTGGTTAGAAGCTCCAGGAGGACAACACCAAAACTGTACACATCACTCTTGTTAGTCAGCTGACATGTCATGAGGTACTCAGGGTCTAGGTACCCACATGTCCCTTGCACCAGAGTTGCAATCTCGAACTCATCATTAGGCACCAGTTTTGATGTCCCAAAATCTGAAACTTTTGCGGTGAGTTTGTC

Coding Potentia
Explanation CPC Score
noncoding -1.17535
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0190200.2 2 34482760 T C
Osa02LNT0190200.2 2 34483231 C A
Osa02LNT0190200.2 2 34483720 T C
Osa02LNT0190200.2 2 34483778 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0190200.2 osa-miR5540 Cleavage 5.0 13.012 1 21
Osa02LNT0190200.2 osa-miR1437b-5p Translation 4.5 16.848 1 21
Osa02LNT0190200.2 osa-miR5508 Cleavage 5.0 21.258 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0190200.2 2 nan Morphological trait Shoot/Seedling RM250 RG256
Osa02LNT0190200.2 2 gn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0190200.2 2 gw2.1 Morphological trait Seed RM250 RM208
Osa02LNT0190200.2 2 pl2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0190200.2 2 sn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0190200.2 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0190200.2 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0190200.2 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0190200.2 2 nan Morphological trait Seed C747 C1445
Osa02LNT0190200.2 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0190200.2 2 ss2 Physiological trait Source activity RM240 RM213
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus