>Osa02LNT0190800.1

GAGCAAAAGTGAAAGCATTCGGGTGAATTCCACGTGTGGTTATTTTACACAGAATACCGCGAAACACTTGGGATGAGATGTCGAATTTATGTAATTGCCTAGCTAGGATTTTACAGGTATTACACAATATTAATTCAAGACCGAGTTACTCCCCAAAAAAATGAAGCCAACTTATAGAGATCCCAATAGCCTCTATGCTAAAGAGCCAGCTAAAGAAATGGTTTGTGTACAGGTACAACAAAAAACAAGCATTCTCCTCCCTAGCCCTGGATCTTTAAAACCTGCAGGGCTCGTTGCCATTGTTTCCATGCATCAATATAAGTTCATTGGATGTGATTGATCAGAAACCTTCCCTGGAGCTATTTTTTAATGTCGATGTGGTTTTCTGCATCCCATACCACAATCTTACCATCCAATCCTGACGTGCTGAACCGTTTGACAATACTGTCGTTTCCTTTTCTCAATGGCACGATGCAAGTTATGCAATTCTCATGAACACCACCACGAGGCTTTGATGGTTCAACAGTATCACTGCTTGCCACTTGCTTTGATTGGCCATATAGCTTTCCGAAGGCTTCAGATAGCTGTGAAGCTCTTGAAGTTGATGTAGTTACTTTTCTTTCATCCAAGTATCTGACAAAGCTCCAAAGTCCAGTCTCATCTGCAGAAAAGATCATAGGATTGCAATCAAATCCAACACCAATCACCGTCCTTTCAGAAAGAAAAAGAATCCACATCACGGAGAGGCAGATCACGCAGTGCTAAATTCTGTGCAGCAGGAGACGTTTCAACATCATCAATGAAATAAATCATGGAATTGTGCCCTGCATAGGCTAGTGTCTTTCCACTTGGCGACCACCTTACACCAAATGCCCACATAGATGATAGGTCAAGCTGAGCAATTTGCTCTCCAAATTTCCAATCAGTAGAAGTGCTCGCATGTGATCCCCTTGTATCGACACCCTTGATGAAAGTGGATAACACTCTGCATTTACCATCAGTTGATGTTGTTGCAAGAAGTATATTGTTTGGATGCCATGCAACACTAGTGACAGAAGATTCATGCTTCTTCCTAACAACCTTGCTAATCCACCAGTTGTTGTCTTGTTCATAGTAGCAAATGCACACAGACTTAGCACCACTTCCTACGGCAAACTTGTTTTCTTTTGGGCTCCACTGGACACATAAAGCTGCACGATTTAGCTTGAGAATAACAAGGGTAGGAACCCAATCATGGCCCTCTTGTGTCCAAACATATGAATTTCTATCATGTGAGACCGTTACGATCTTGTTGGAAGATCTACTCCAATCTATTCCAGATACTATTTGATCATGCTTTGAAAGAACATGAAGTTTCTCCCACTTGTCAGTAAAAAACTTATAGATATGTACTTCATTGTTGTTTGGACAAAAGGCAATCATCGAGTGGTCGGGGCTCCACGCGTGGCAGGTGATGCACTCGGCGAACTGGTGGATCGCCGCCGCGGCCATCGCGGGCGGCGGCGGAGGGGAGCGGCGCGGCGCGGCTGTGGCGGAGGCGGAGGTGGAGGGTGGTGATGGTGGTGGAAATGGTTGGAACT

Explanation	CPC Score
noncoding	-1.15374

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0190800.1	2	35057581	T	C
Osa02LNT0190800.1	2	35058313	A	G
Osa02LNT0190800.1	2	35056988	T	C
Osa02LNT0190800.1	2	35057809	A	G
Osa02LNT0190800.1	2	35058161	T	G
Osa02LNT0190800.1	2	35058207	T	C
Osa02LNT0190800.1	2	35058479	T	C
Osa02LNT0190800.1	2	35058962	G	T
Osa02LNT0190800.1	2	35059006	C	T
Osa02LNT0190800.1	2	35059115	A	G
Osa02LNT0190800.1	2	35059549	T	C
Osa02LNT0190800.1	2	35059726	A	G
Osa02LNT0190800.1	2	35059850	A	G
Osa02LNT0190800.1	2	35060185	G	C
Osa02LNT0190800.1	2	35060551	C	G
Osa02LNT0190800.1	2	35060748	A	G
Osa02LNT0190800.1	2	35061077	A	G
Osa02LNT0190800.1	2	35061193	A	G
Osa02LNT0190800.1	2	35062175	T	C
Osa02LNT0190800.1	2	35062209	A	G
Osa02LNT0190800.1	2	35058663	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0190800.1	osa-miR414	Cleavage	5.0	13.563	1	21
Osa02LNT0190800.1	osa-miR1438	Translation	4.5	15.901	1	22
Osa02LNT0190800.1	osa-miR1857-5p	Cleavage	4.5	13.843	1	21
Osa02LNT0190800.1	osa-miR1857-5p	Translation	5.0	13.369	1	21
Osa02LNT0190800.1	osa-miR1866-3p	Cleavage	3.5	13.648	1	22
Osa02LNT0190800.1	osa-miR5485	Cleavage	5.0	14.246	1	21
Osa02LNT0190800.1	osa-miR5511	Translation	4.5	13.999	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0190800.1	2	nan	Morphological trait	Root	RG256	RG151
Osa02LNT0190800.1	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0190800.1	2	gn2.1	Morphological trait	Panicle/flower	RM250	RM208
Osa02LNT0190800.1	2	gw2.1	Morphological trait	Seed	RM250	RM208
Osa02LNT0190800.1	2	pl2.1	Morphological trait	Panicle/flower	RM250	RM208
Osa02LNT0190800.1	2	sn2.1	Morphological trait	Panicle/flower	RM250	RM208
Osa02LNT0190800.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0190800.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0190800.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0190800.1	2	ss2	Physiological trait	Source activity	RM240	RM213
Osa02LNT0190800.1	2	nan	Morphological trait	Panicle/flower	RG256	RG151
Osa02LNT0190800.1	2	Hd7	Physiological trait	Flowering	R3393	R2511

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus