>Osa02LNT0191100.1

AGGTGAGGTGATTGATAATTGATTCAGGGAATGCAATGCAGTGCAGTGCAGCTCAGCAGCAGCTATATACGGGACCGGACCGGACTAAGACGAAATTATTCCTTCCATGGATTCCATATTTCCATGTATCTTCTATATCATTTGGAGATATATAATCATCACCACAATGTCCTCCTCCTACTATCAGATGTCCATGATTGTCATCAGACCAACAAGACAATGAGCACCAGCTTTCTTTCTGGGTCATCTTGATCAACCTGGGTCATCTTGATCAAGGAAGAAAAGCTTTGCAGCCCAGGCATCAATGGTGGTGATGGTGGTGGTTGTGAGAGAACGGCCACCATCTCCTCTTCCTCGTCGTCTGCGACCTCGGCGCATGCTGGCGACGAAGACCGGACATGCATTGCATCGTATGCCAATGGCAGGCAGGGCCTACTCACCGTTCTGCGGATATATGGAGTTGTAGTGAACCTCCGCCCAAAAGCTCAACAGCACCACTTTGTTGGACTTCTGAACCTTTGGTTGGATCTCAATGTAGCACGTATCCTTGAACGATGTCATCACGAAAATCTTAACTCCATACTTGTCAGCAGCAGCCTGTAGAGTCACATGGTCACCCCATTCACCATTTTGTGATACTTTCTCCAAGTAATCGTCATATGCCATGGGGACATATCCATCGTAGGCATCACGGTTACTTTTAAGCTGGCTCATAATCTGCTGCCTCACAAACTCATGGTGATCGGGACTTTGATACAGTTGATCTGATAGTGCCCGAAACTGACAGTTGCCATCTCCTTTCACCTTGTGCTCAACTAGTTCATACAACCTCAACCTTTCTGTCAGCCTTTCATGGTCCATGGTAGCTTCATCGACTGAAGGGATCTCTCCATTAATTTTAGGAACATGGGGAACTGGCACCATGGGGTAAAACCTCTTTCCTACTTCTTCATCCATTGGGAAACTGTCGTCAGTGTCTGGGCATGAATTGGAACTAGTCGGCTCTATATAGACTGTGTCATGGTCATGCTCACCAGCATTTCCAGGATGGTAGATGCCTACTGATGGGTTGTACAAATCATATGTCAGTGCAGAAGAATGCAAGTGCGTCTCATCCAGATGTGATGCATCTCTAGCATAATGGAGGTCACAATAGTTGCCATCACCGTAACCATGAGGAGGTCCATAGTACCCGATAGGAGCAAAAGGGTCACGGAAAAGGTCATAACCCCAGTGGAAATTTTGATCTTTCTCACACATGTTCATCCGTTGAAATCAAGCTCTGTCAAAAACACTCCCCGCGTGTGCTCCACCTACGACGAAATTCCTCGCGTCCGTGAGGGGATTCTGCAGTCGAAAAAAATTGGATCCTTTCGACGGCGAGCCCGGAGCAGATTACGTCGCCGCGGCAGATCCACGGCCACTCTACGAGTCCACACCACACGGGGCAGAACTCACCGCTCGGCTCGCCGCCGGCGAGGCACGTCCGCGGCGGAGGAGCGGCGGCGGTGGTGGATGACAACGCCGATGAGCGGCAGCGGCGGCGGCGAGGGATCGTTCGGGAGGAGGCGGGCAACCACCCGGCCGCATGAAATCGACGCGCGAAGGAGTCGAGAGCAGCCAGCCACCGGAGAATTCGTGGTGGGATTGACGGCGGCGAGAGAGAGAGAGATTGCTGCGTGCAAGAAGCGCGGCGAGAGGGAGAAGAAGAAGATGAGACGGGCAAAAAAAACTGCTTCTTTTTTCTTGTGTTCTTGAGTTTTTTTTT

Explanation	CPC Score
noncoding	-1.08691

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0191100.1	2	35179503	G	A
Osa02LNT0191100.1	2	35180778	A	G
Osa02LNT0191100.1	2	35181262	A	G
Osa02LNT0191100.1	2	35181549	A	G
Osa02LNT0191100.1	2	35181892	T	C
Osa02LNT0191100.1	2	35182527	C	T
Osa02LNT0191100.1	2	35182766	A	T
Osa02LNT0191100.1	2	35183368	A	G
Osa02LNT0191100.1	2	35183487	G	A
Osa02LNT0191100.1	2	35183659	T	C
Osa02LNT0191100.1	2	35184087	T	A
Osa02LNT0191100.1	2	35179618	T	C
Osa02LNT0191100.1	2	35180904	A	C
Osa02LNT0191100.1	2	35180690	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0191100.1	osa-miR5542	Cleavage	3.5	17.663	1	21
Osa02LNT0191100.1	osa-miR2102-3p	Cleavage	4.5	18.342	1	22
Osa02LNT0191100.1	osa-miR2927	Translation	4.5	17.658	1	23

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0191100.1	2	gn2.1	Morphological trait	Panicle/flower	RM250	RM208
Osa02LNT0191100.1	2	gw2.1	Morphological trait	Seed	RM250	RM208
Osa02LNT0191100.1	2	pl2.1	Morphological trait	Panicle/flower	RM250	RM208
Osa02LNT0191100.1	2	sn2.1	Morphological trait	Panicle/flower	RM250	RM208
Osa02LNT0191100.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0191100.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0191100.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0191100.1	2	Hd7	Physiological trait	Flowering	R3393	R2511
Osa02LNT0191100.1	2	ss2	Physiological trait	Source activity	RM240	RM213
Osa02LNT0191100.1	2	nan	Morphological trait	Seed	C747	C1445

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus