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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0191400.1

GCTGCTCGGCAAAAAATTAGTACCTGCTGCTGAGGCACTATGAATGAAGTTCATGTCATAACACAAGGCAGGAGAATCAATCCGCGGACGAAATAATCGCAATGGCTGCTGGCTGGGGCACTATGAATTTTCTGGAAAGACGGTCTGGATGAACTTGAGGAAACGCTCCGAGTAGAACTGGGGGTCCACGGCGGAGATGGAGATGGAGTCGTACTGCATGGACTTGACGGCATGCTCTATCTTCTTTGACATGTTGTACTCCTGCAATATGTCTATGATACCCAGGTAAAGGACCACGTCGTACACCTCCCGAAACGATTTGCTTTCCTCTTCTTTAGGGTTCTGCTCTGCCCTTGCAGGCATGTTAACCCCTAGCTGGATCTGCAGCCTGGCTGTACCAGGAAGTAGTAGATCTACTTCCGCAAATCCAGCGGCTGTTGATCGTAAACGGCTACCTCTTATGTGAGGGCCAACAACCACACTGTTTTCATCACCACCTCTTTGAACCAACACTAGACCTTCCGGGTAGTTGAAAGCATCGTCCTCCTGAGCGTCTTCTTCTGAAAGAACAGTTAATCTATCTGCTGCCATGCTTCGATGATAAGATGCACGCGTCCGAAGGTGCTGGGGAGCTCTATAGTGCACACCAAGCAATAAGCTGTAATCCATTATCCGTTGGGTCCTTAGAAATTCACTGTCAGTTTCAATCTGCTTAAGTAAAGCCTCACGCCAGGAAGGTTCAAGATAAAATGAATAGTTAAGATCCAAATCCTTCAGAGTTGTGTTCTCATCAATTTCGATTTTGTCAGTAGAACGGCCTAAGGATGAACCTTTCAAATCAAATCTCCGATGAATCCTCAATTCCGTGCAAAACATGTTACCCATTACAACAAAGCGAAACTTTTGACCACTAGAAGGCTTCACCCTGTGGAGGCCAAAAAACTTAGTTATGAGGGTGTTCTCATAAGTACGGACATGATGGTAATATTTTGGAAGCATTCGTAAAAGAACCTGGACTTCAGATTTCCGAAGAGTCTTGATCATGAATCGATCATCTTGTGATAGGAAAAAGACACTTCCACTCTTTCCTGGAGAAGATAACTCCCTAAGTGCAGAATTTCCACATATAGAGATCATATAATCTGCAGCATCAATCTTGAACATCTCCCTCAAATTTCTACAAAAAATAAAATAAGAACAATGGCCATTTTAGGTGTGTGACAGAAAGAAGAGAACTATAAGCTAGAAATAAGAATAAAAAGAAAAGAAAAAAGGTACATAGCTACGTTCAGATTAAGTGATGATAACTACGTTAGGTGAGTATGCCAATTCTAAAGATCATGTAAATCTGCAGAATAAGTGTATGGGCATATCTTAGAGATGTACATTGGGATGAAAGCTAAATAAGTGCAATGAACCTGAAAACCATGGGACAATAGTCCTTCCATTTGAAGTCTTCTGCAGGATGTGAAGGAGTAAGTCGTGATCCTTCTTTGGGGAAGGTCATCCAGAAACTTGCTCGTGGACCAAAATCTGAAGCACGGACTTCACGTTTCTGAATGGGCGTAATCTTTCCTACCGTGTACCTGATTCCAAGCTGTAGACTGAGCATAAGATCATAGCTTCTGTGACCCTTAATTATTGTCTCTCCTGGCTTTTTTGTCTCCCTAACAATTTTCTTCTGGCGCCGTTTTGCCTTCTTGGACGAATCCGAAAAACTCCTGTCAAGTACTACCTCGCTGATTAGAACACCTTGCATATATTCCCGTTCCAGCATAGGCAGATCAGAATCATTAATGCTTTCAGATCTTTCTAGGCCAGAGCTTCCAGTTGCGTCATGGCCAATGAATTTTTCAATGGCCACCTCAAGGCTCCACCGTCTTTCCAAGGATACATTTTTCGAATGAGGTTGCTCACTTGAGTTCCTTCTAGATGAAGGACCTGAAGATTCCCGAGTTAAGCCAACCTTCATGTTCCCCATGTCAACCGAAGAAGAGTGAAGGATGCGTGAGCCGTGATTCTGCCTTCTAATGTCAGGCAGCACACCTCGGTTTCTTAGATTATTGATGTAGAGCTCATCATTAACAGGAACTCTGCAACCTTTTGGATAGAATGTGCCTTTCCCATCCTTCAGTCCCTTGGTCCAAGTACCAACATAATACCCACACTCATTCCATGTATAGATTCCATACCCGTGCATCATGCCATCTAACCAGTTTCCTTCATATGAATCCCCATTTTTCCAAGTAAGAGTTCCCTTCCCAGACATCTTGCCATTCTTCATATTGCCAACGTAAGTGTTTCCATTTGCCCACGTATACTTGCCATGGCCTTCTATTTCTCCCTGAATCCAAGAACCGTCAAACATGTCTCCATTAGGGTACGTCTGGCATCCAAGTCCATGCTTACGATTCAATTTCCACCTTCCCTTGTAGACGATGTTGTCAGACCCGGTATATGTGCCTTCACCATAAATGTAGCCACCAGAGTACTCACCCTCGTAGGTGGCTCCAGATGGCCACATTGTCTTTCCTTGCCCATGCCTCATCCCTCTCCTCCACTCACCATCGTAAGTGCAACCATCTGACCAGACATACCTCCCTGAACCCTCTGGTGTGTTCCCCAATAATGTGCCGAAATAAATATCCCTGTTGGAGAGCCTGATCTCTCCAACTCTGAAGCCAGGGTTTGTTCCAGAAGCATGAGAATCTTGGCCATTTGCTAAACTGGACAGTACCTCCTTTTCGATATTGCAACTAGCGTCTCGGAACAGCTCTACTCTTTGAGAACGGGAGATCCCTTCTAACTCATTTGGAAGGACTGCAGGGGCTGTCATGCATAAACCCACTAGGAGGACTAACCCACAGTCGCGAGGAAGATACTCCTAAGCACGGCCCAGGGGGAGAGGAGGAGGCGATTGCGAGACGAACTCGACGACGGCGACGACGAGGCGGAGCAGCAGCAGCGAATCGAATGGCGATCTGGAGGGAATCCCTCCGGTGGATGCGGTTGTGATTTGGTTGGTTGGTTGGAGCGGAAGCCTCGCCGTCGCCGTCGCCGTCGTCCTCCTCCGGCCGGCGTGCGTCGCCGACGAGAGGCCCCTCTCCGCTGCTGCTTCGTCTCGTGTGGTGGTGTATGCGGCGCTAGATCTTTTACTACTACTAGTACTAGTAGTGGCCTGCCTGCCCCCTGCCCGCGACGCCGCTCGATCACT

Coding Potentia
Explanation CPC Score
noncoding -1.23093
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0191400.1 2 35307940 G A
Osa02LNT0191400.1 2 35308423 A G
Osa02LNT0191400.1 2 35308756 C A
Osa02LNT0191400.1 2 35310187 G A
Osa02LNT0191400.1 2 35310407 A G
Osa02LNT0191400.1 2 35312724 G A
Osa02LNT0191400.1 2 35313501 T C
Osa02LNT0191400.1 2 35312084 T C
Osa02LNT0191400.1 2 35309000 T C
Osa02LNT0191400.1 2 35311945 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0191400.1 osa-miR812v Cleavage 3.5 11.086 1 24
Osa02LNT0191400.1 osa-miR5823 Cleavage 4.0 12.138 1 24
Osa02LNT0191400.1 osa-miR818f Translation 3.5 13.266 1 21
Osa02LNT0191400.1 osa-miR7692-3p Cleavage 4.5 13.951 1 24
Osa02LNT0191400.1 osa-miR167a-3p Cleavage 4.0 19.719 1 22
Osa02LNT0191400.1 osa-miR168b Translation 5.0 16.661 1 21
Osa02LNT0191400.1 osa-miR408-5p Cleavage 5.0 9.355 1 21
Osa02LNT0191400.1 osa-miR416 Translation 5.0 14.121 1 21
Osa02LNT0191400.1 osa-miR426 Cleavage 4.5 16.197 1 21
Osa02LNT0191400.1 osa-miR2055 Cleavage 4.0 13.957 1 21
Osa02LNT0191400.1 osa-miR2055 Translation 5.0 16.509 1 21
Osa02LNT0191400.1 osa-miR2097-3p Translation 2.5 11.303 1 22
Osa02LNT0191400.1 osa-miR5521 Cleavage 4.5 19.962 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0191400.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0191400.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0191400.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0191400.1 2 ss2 Physiological trait Source activity RM240 RM213
Osa02LNT0191400.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0191400.1 2 gw2.1 Morphological trait Seed RM250 RM208
Osa02LNT0191400.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0191400.1 2 gn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0191400.1 2 pl2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0191400.1 2 sn2.1 Morphological trait Panicle/flower RM250 RM208
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus