\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0191500.1

ATATGGTCACTTGACCAGAGCAAATGCACTCATCTGAGCATAGAACTTGTTCTCTTCCATCAAAACTATATCAACACTGGAGCACAGTTTAGCAATGGAACACAGATTGTAGGAAGTAAAACTCCCCAGTTACTTGTCGACCTCCATTGCTTGCGCAGCTTTGGCTTTTGTTAAGGCTGAAAGTTTTGTCTTCACCTTTTTCTTGCCAACCTTAAATTTGCCACCCTTCCTTTTCACATCACCATCTATCTTCATCTTGGATTTCTTGGCCTGCAGCTTCTTGGCCAGTTTCTCCTTCGCCTCCTTTTCCCCTGCACACACACACATACAAGACAGCCACCATAATCCCAAATCAGATGCCTGGTTGGTGAAATCTACAAGGAGATGAGAGGAAAATCGACAAGGGAGCAGCCGGATGTATGATCTATCGGTGGTACTTTGGAGGTCGAACTCGTGCTGCTTCTTCCGCTTGGCGAGGTTGTTCTTCTTCGACATCTTCCTCGCCGCCAACCGCCGACGAAGCACAGCACAGCACGCAGCAACGAACAAACCCTAGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.740365
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0191500.1 2 35422812 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0191500.1 osa-miR169p Translation 5.0 23.796 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0191500.1 2 gn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0191500.1 2 gw2.1 Morphological trait Seed RM250 RM208
Osa02LNT0191500.1 2 pl2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0191500.1 2 sn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0191500.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0191500.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0191500.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0191500.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0191500.1 2 ss2 Physiological trait Source activity RM240 RM213
Osa02LNT0191500.1 2 nan Morphological trait Seed C747 C1445
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus