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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0191700.2

GTTAGCAGTTGGTTTGGTATTATAGTGATCTTCAGAAATGGTATAGGGTATACAAAGCAACGGAAGAAAACTGATGTGGTGGTGTTCCATTGCGCATATCTGTCATTGATGCTTCAATATTTACACTGCCCAAGTTATAGACCACCTCAATTTCTTAAATGGAGAACAACCCCAAAGCATGTTGCTTGACTGCTATTATTACTGAAGGCATGTATTTTTTAAGGGATATATTTTTTACACGGTGTTCAATAACATACTTTGAACCTATTATTACTTAAGGCATGTATTTTTTAAGGGATATATTTTTTACACGGTGTTCAATAACATACTTTGAACCTATTATTACTGAAGGCATGTATTTTTTAAGGGATATATTTTTTACACGGTGTTCAATAACATACTTTGACCATTAATTTATTCCATGTTATGCTCCCAATGAATATGAAATTAGCATCATATGAAAGGACTTCAAAGTATGAATATCACGAGCTTGCAAATAAGCAGAGTGGTAGCTAAAGCGACAACCCACAAAAAAGATCAATGTTGCAGTGCTGATCAATTTATTTTCACTCCTTGCTGCGAATCATCTAAAAACCTGGACTACTGTCATATTACCTGAAGATGAATTATTGCGAGCTGAACATGGAAAATTCTGGTATGCAATCCAAAGGTGTCAAACCTTGGATATGAGATTGATGTCAATGGAGGTGCGAGCAACAGTCGACATAGTAGTTGACCCTAGTTCCGAGGCACGCACGGGATGCAGCAGGACCACGGCGCCCCTCCCCTCCCCTGCTGTGCTCTGCTTACCGCTGACATTGCCACCAGCTTCGGCTTCTTTTTCGGCCTTGGCTCCAGCTGCGGCCACTCTCACGTCGTCCTCCTGTGGATGGACTCCAACCTCGCCCCGTTGATCGTTGCGAGATGTTTCCTTAACAATAGATTATATGTGCTTTAGGGTTGTGCATCTCTTCACTTAAACCAAAATTTTCCAGAATAGAAGCAACCAATGTGGAGAAATAGTGTACAGCATAGGAGCCAACCCCTACCGCAGATCCATAAATTGTGAGGTAAAATAAACTTTTCCTTCCCATTGGTAACAATTTCATCCCCAAGAGAATAGCACCAGTTTTGAATGATCCAAGTGATAGCATCTCAATTCCCTGAATGCAGAAAGCAATCCCCAAAACATTGTTTGCTAGCCAATGCTTCTTCGCAGAATACCATATGCAAAAGAAAAATCCTGGGATTGATGTAACAACTTGAGACTTGGTAAACTCCACTGAGAGCGAGTGGAAAAATGCATCATGCTGAACGATGAAATTATCATTCCATTCTTTTGGAAGAAATCATTTCATGGAAGGCAGCAATGTTGCACTGCCAGCTTTTGTGTACATCATTGATTCATTTTCCTAATGATCGTGAATAAGGCACTACTGGAACTCGCCTTCGATTTAGCACAACACTAATGAGGTAAATTAGAACATGGACAACCAGACAACTACCCTACCCCTCATTAAAAATAAAAAGGCCCAAACCTCCTGTCCCCACCTGATGCTGGCCTCCTCCCTTGTTCCCCATCACATCGCTCCAGCCGCTGCTGCCATCTCTCCCGCGCAACATGATCAGAAATCCGGCCACCCTCACGAGATGGCCACTGGGAAGAGCCTTGGGGATGGGGCTTGGACGCCGCCAGCCACCTGCCTCATGACCGCTATGAGCAGCGGAAGCAGCAGGGCGAGGAACCGCCACCAAGGTTGAGCGGCCATTGCTGTCGCCGATTGAACCGGTAATTTTTTTCTCTGTTGTGAAAGGGATGAACACCGCGGCAAAGACAAGGGGAAGGAGGATCTGAGACCCTTAGCCTCCCTGTTGCAGCCGATTCATCCCCTTGTCATCGTTGACAATGGCGGCAAGCTGCTCAAGGAGAGCTCGATTCTGTGTCCGCTTGGCCCTTGGGGCGAGGCAGCCCATGAGAGTGGCAGCGGCATTGCCGGCGTTGTTCTCCTCAATAAAACTGATTGTGGAGTTCATTACGAGCAGTGTGATGATGCCCACGAAGTCCTGCCAGCCCGGCAGCTTCCTCCTCCATTGGCAAGAGCGATGGCCATGATCGCCGCGGCCTCCATGACCCAGGACAGCGGGTTCCACATGAACCTCAAGAACTTGCTTTCCTTCTTCTCCTTGAGCTTGTTGGGGCCGAAGAGGTTGAGGCACTGCTCGGCATTGGTGGAGGTGAGCCAGCCGGAGACGGCGATCGACAGCGACGACGGCAGTGGCACCGCGAGGCGGAGGAGGCCGGCGAGAGCAGGAGGTGGCACCGCGATGGGCAGGCGGCGGCGCCGTCGGCGTCGGCGTCGGCGGGGGTGGAGAAGAGTGTTCGCCTCCTCCCTTTCTCCATGTTCACCTCGAAGCCCACGCTCGGCGGAAAGGCGTCGGAGCGAGGGGAAGGCAGAGGTGAAGGCAGTCGGAGACTGCGACACGACGGCGGCGTCGGTGGAGGTGGAAGCGGCGGCGCGAGGGCGAGGCAGATGTGGACGCGGTGGCGCGAGGCGACGGCGGAAGTGGCGGCGCTCGACGGCGACGGCGACGACGGTGGCGGAGGAGGGGAGGCGGGCGACAGCGGCTAGGGTTAGGGGTGAGTGGACCGGCGGCGGAGGAGGAGGATGGTTGAGGGAGAGGGAGAGAGAGGAGGAGCGGCGGCGGCGTTCGGCGGCGGCGCGAGGGGGAGGCGGTGGCGGCGCGAGACTGCGGCGGCGGCGGTGGCGCGAGGCAAGGCAGGAGAGGGAGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.441965
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0191700.2 osa-miR5540 Cleavage 4.5 18.195 1 21
Osa02LNT0191700.2 osa-miR5540 Translation 5.0 11.059 1 21
Osa02LNT0191700.2 osa-miR5544 Translation 5.0 16.374 1 22
Osa02LNT0191700.2 osa-miR5544 Translation 5.0 14.492 1 22
Osa02LNT0191700.2 osa-miR5544 Translation 5.0 14.428 1 22
Osa02LNT0191700.2 osa-miR5795 Translation 4.5 16.037 1 22
Osa02LNT0191700.2 osa-miR166l-5p Translation 5.0 15.257 1 21
Osa02LNT0191700.2 osa-miR1850.3 Cleavage 5.0 14.712 1 22
Osa02LNT0191700.2 osa-miR2118d Translation 4.5 23.409 1 22
Osa02LNT0191700.2 osa-miR3979-5p Cleavage 4.5 7.137 1 20
Osa02LNT0191700.2 osa-miR812o-5p Translation 4.5 18.962 1 21
Osa02LNT0191700.2 osa-miR5157a-3p Cleavage 4.0 12.098 1 24
Osa02LNT0191700.2 osa-miR5157b-3p Cleavage 4.0 12.098 1 24
Osa02LNT0191700.2 osa-miR5521 Translation 4.5 17.015 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0191700.2 2 nan Morphological trait Seed C747 C1445
Osa02LNT0191700.2 2 gn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0191700.2 2 gw2.1 Morphological trait Seed RM250 RM208
Osa02LNT0191700.2 2 pl2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0191700.2 2 sn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0191700.2 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0191700.2 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0191700.2 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0191700.2 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0191700.2 2 ss2 Physiological trait Source activity RM240 RM213
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus