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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0192200.1

GGAGAGCTCAAGTAGGAATACAATTTTGAAACAACTGAAATTGAAAATAAAAAATTAAAACATTAAAAGAACATAATACGGTAGTAACTAATTTTTAAAAAAAAATAAATTATGAAATTAGAAAAAGAAAAATAAGATTTCAATTAGGAATACAATTTATAAATAACTAAAATTTGTGATAAAAATAAAGACTATTGAAAAAAAAAAGACCATCTAAAACACATGACGAGATAAATTAAGTAACATGCCTATAAAGGAGTAGAGTGGTGGCGGTTGATACGACATATAAAAATTGTTAATAAAACACCAAATGGAATCCTAATGACGATTAAAAGGAGGAACGTCAGGTAGGCCGTGAAGCAAACAAGTAAGGCACTTGCTGGGACTTCTAGAAAGTAAAAAAAAACCCATTGATAATCATATTCGATTTTTAAAATCTCAATGACAATAAAAATGAGAAGCAGCGGGCGAGGTGTATAGGACTATAGTTGCAGAG

Coding Potentia
Explanation CPC Score
noncoding -1.36157
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0192200.1 osa-miR2872 Translation 4.0 9.127 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0192200.1 2 gn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0192200.1 2 gw2.1 Morphological trait Seed RM250 RM208
Osa02LNT0192200.1 2 pl2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0192200.1 2 sn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0192200.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0192200.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0192200.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0192200.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0192200.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192200.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0192200.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192200.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192200.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus