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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0192400.1

GTATGAATCTCACGTGATGAATCACATATACAGCAAAATGTCAGGCAGGTCAGCTCTGCTCAGTGGTCAGGTGAGGTGCTGCCGCTTGTATCTGAAACAATGAGAAACTATCTCCACACCTCAACAACACTATACCCTAAGCTGACTGAGGGAATCCGGACCAACGAGGTATATTCGTCTTCGACTACTCTTGTACCGGAAGACTACTACTCCTTTATAAGCTGTTCTTGGAATGCCATCCTTCCATTCTTCAAATATTCCAAATTGACGAGCTATCCGCTCAAAGTCTTCCTGATCGTTATACTGGATCCTTACATCCGCATCCATATTGTGGGCTTTCAACGCGGCATCAGATCCATGGAGAGGGGTGGCACTAGCGACGTCTTTCCCAAATTGGATCAGGAACTTGTCCTCCTTGAGGTAGCTCAGGTCCTCAGAATTCCACTTGATATGGGCATCATTTAGCTTGATTGGTTCCAAGTACTGTCTGAAGAATTGCCCCATGCTTGACCCATGTTCGCCAAAATTGTATGTTCTGCAGACTTCCGGGCGAATAAATTGCCGGTCTCTGTGTACCTCTTTTAGCCTCACCCAGTCATCCCAATAAGCTTTGGGCCACTTAGGTGACAGCTCAATCCATGTAGGCTTTGTTAACATCCATCCAAGTCCAGGAAAGAAATCCGACCGGTAAAGAGCTTTTGGGTCGTAAACAAATTGCTTTTGTCCATTGTCATTCCAGGAAGAAACGGCCATGATTGTCTTATCGTTATCAAGTAATTTAGCTGCAGCCTCGAAGTAGTCAAAAAAATCAGGGGCGATCTCCATATCATCTTCCAGAATTATTACTCGCGCAAAGTTGTGTTTGATGAATAGCTCATCCAAGGCCCATTTGTAATGTTTGGCTATCTTGTAATATGCTATCAACTCTCCTGGCCTTTCAGTGCGCACAGGTTCAAGATCTAAATGCTGCATATATGTTATTTCATTATAACTCAAAGCTTTTTTCTTCACTTCTCCATTTATTCCATCCTGAGATATAAATAGTGGAAACTTTGAAGCCACTGATGTCTGATACTTCAGGATAGATTCAACTGTCCTTTGCAAATAGTCTGGTCGATTGCAAGCCATTACAACAACAGCAGCAACAGGAGCCACATTGTTGTTTACTAAGGTCTGCACGCTCCTTTTTTCGAGATCTTGGATTAAAATCTTGAGGTGTACACGTTCTTCGTCTTGGCGTATCTTCATCTCTTCCAACGCGACAATCTTCTCCTGCTGAGAGCTGACTTGATCGATCAAGGAGCGGAGTTGATGCTTGTGCGAGGCGGTCGGCGTAGTGGGACTGAGTAGAAAAAAGGCGGACTTGGATGTAGATGAAGGCTGCAGCGGCGGCGACGAGGAGGATGCGGAGGTCGCAGGGGCTCCGCGCCATCTCTTGGATCTCCCCCAACACTAGTCTAGTAGCCTTTGATTTGGGATGGGATGTTGGGGAGAAAGGGGAGGAGGAGGAGGCTACTACTTGGTAGTGGGCAGGGCAGAGCAGGTGAGCTCGCAATTGGATCTGCACCTGCACCGTACCTGCACTTCTTCTTCTTCTTATTCTTGTGCGGTCCGGAGGAAGTGGAGGTGGATCAGGTGGAGGAAGACGCCGCCTGCGCCACCGCCGCCGCCTGCGCGAAGGAAGAGTTGAGCGGGCGGTGCGGCGCGAATAGATGGATGGCGGCGGAGGAGGGGAGTGGGTCGGCGCCGGAGCCGACGCGGAGAGACGGGCGACGTCGCCTCCCTCCTCAACAGGGGAAGTGCGCGATTTGGGCGTGGGAGAAAGGAGAGAATT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.943177
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0192400.1 2 35814101 A G
Osa02LNT0192400.1 2 35814610 T C
Osa02LNT0192400.1 2 35814628 C A
Osa02LNT0192400.1 2 35815080 C G
Osa02LNT0192400.1 2 35815991 G T
Osa02LNT0192400.1 2 35816680 A T
Osa02LNT0192400.1 2 35816681 A T
Osa02LNT0192400.1 2 35815640 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0192400.1 osa-miR5813 Cleavage 4.5 24.644 1 22
Osa02LNT0192400.1 osa-miR169f.2 Translation 4.0 18.795 1 21
Osa02LNT0192400.1 osa-miR528-5p Translation 4.0 16.766 1 21
Osa02LNT0192400.1 osa-miR1874-3p Cleavage 3.5 19.68 1 24
Osa02LNT0192400.1 osa-miR1874-3p Translation 4.5 16.226 1 24
Osa02LNT0192400.1 osa-miR2275d Cleavage 4.0 24.239 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0192400.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0192400.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0192400.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192400.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192400.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192400.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192400.1 2 gn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0192400.1 2 gw2.1 Morphological trait Seed RM250 RM208
Osa02LNT0192400.1 2 pl2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0192400.1 2 sn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0192400.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0192400.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0192400.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus