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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0192500.1

CTCAAAACAAGATCCATTTACTAACCGCTCTCTGCAAACAAAGTACTTTGCATAATTGCATATACACCCAGAACAATTAAACAAGCTAGAAAAAAAAGGTGCGAAGAGAAAAAATATCCCCAAATCCAGGCCTACAATTATCTAAAAAAAATCCAAGCCTACAGCAAAACTGCAGACCATTCTTCCAGATCATTGCTTGCTTCAATCAACAGCGGCTGGATCTTGCGTAGCTCCATTCCTCCGCTCCAAGAACGGCCACAGCCGACGCTGCCGCTTCCTCCTTCAGCGCGCCGACGCCACCGCTCCCCAGCGCACGGCCGCTGCCGCCGCCGCCGCTCCCTACGCCACCAGCGACGAAAGTTGGGACTGGTCCGACTGGATGAGTAGGTGGGGATTGGGATGGTTGATTAGGAATTGGGGGTATTTTGGTCTCTCTGGGGTTCTAAATTTATTTTTTTCTAGATGAAGTCCTAACGATTGAGTGGAAACGAGATTAGACGGCAACTTTGATTTTGAAAAGCAGGGTCAAATAAGCAAACTTGAAAAAATATGATCAAATTGGTATTTAGGCCTTAGAACAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.909812
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0192500.1 2 35933118 A G
Osa02LNT0192500.1 2 35933165 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa02LNT0192500.1 DTM_#DNAt_MULE_japo_Os2088 Chr2 . 35932284 35933196 580
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0192500.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0192500.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0192500.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0192500.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0192500.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0192500.1 2 gw2.1 Morphological trait Seed RM250 RM208
Osa02LNT0192500.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192500.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192500.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192500.1 2 rbr2 Resistance or Tolerance Blast resistance RM213 RM208
Osa02LNT0192500.1 2 gn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0192500.1 2 sn2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0192500.1 2 pl2.1 Morphological trait Panicle/flower RM250 RM208
Osa02LNT0192500.1 2 Pi-y(t) Resistance or Tolerance Blast resistance nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus