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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0192600.2

ACATATACACCACGTACTCCATTAACTCAATTAATTTAGTACATTCCAAGCATACATCATGATATATACTCTCCTAGTAGCTTGAGAAACATTTGTACATACATAACGCATGGCAGCTCTAGCTAGCCTGCATCCAGTTCTTCAGCAAGTTTTATGGCGCCGCCAGCTGCACCATCGGCTCTTGACTTGCCTGCTGCTACACCTTGCATCTTCTTAACCTTTTTCTTTCCACTGAGCGAGCCGCTCGCTTGCCACTCATAAACAACTTTCGACTCTCCCTTGACCACTTTCGGGTATTGATCTATGCGAGAATCTTCCAGTATTAGTTCTTCCACCTTCTTCCAAAGGAAAGCATTCCTTCTCTCTTGTGGGACTAGCAGATGATCTCGCAGCCAAGACGTGACCACCCAAGGCTCACATTCAGAGTTGCCAATCTTTGCATCTATGGCATTATCTTCAAGGACCTCACACACCTTTCCCCACAGCCACCACCTCCCTCATGCTTGGAAAAGGTGAAAGAGATGGTGGAACTGCTGACGTACTAGTGAATTGCGCCAGAAAAGTGAATGCTAGTACTGCAGTAACTCCAATCAAATTTTGCCAACAAAAAACAATAACAGCTATAGCTTACAGCAAGAACAACGTTTACTATACGGTTAATCAGACTTCGTCGTTTTATGCAAATTAGCAGCAAATAACCCTTCGTCATGGGATAAAGAACTGGAAGAATTGTGTGTGTGTGTGTGTGTGAGTGAGAGAGAGAGAGAGAGAGAGGAATTTCATACCTGAGCATATATTTGTTCGGCCCTCTTTGATAATGCTTGTCTCTTGTAAATAGTCCAAAGAATCCAGAGCAGTGCAGGACACCAAAGGCTGTCACAGACATGATATTTCTTGAGATCCATTGCCGAATTTGACAGGTCAGGGGCCTATAAAGCTCGGCAACCAGGTCTGGACATTTAAACTCTTCGACTCCGTCGGAGCTGAATGTTTTCTCAAAGAAGGCCCGCGCACTGTCCAGAACCTTAATTTTTGCAACCTTAGCTCCATCCTGACTTAGGCCAACAAAACCCTTGGATAACAGCTCATCAGCCATGTTTAAGATATCGAGCTCTTGGAACAAGATTTTGGCAGGTTGGCCACATAAAGCACGGGCATATTGATCGCAGATCCTCCGCTCTAGCAACTGTGAAATCTTGGTAGCAGTTTGGCTGACCAGCCCATCCTCTATGCACAGGTTGCCATATTTGTTGAATCCCTGGACGCACTCCAGGTTTCCGTCTACGCATCGTCCATGGGGAGGGCATGGTTGGCATGAATCATGGTGGGTATAGGCGGCGCCGCCGCTGTCGCACAAGGGTTTGGGGCGGCGGTTGAGAAGGCTGCAGGCAGCGGCTGCTGCGGCGGCGATGGAGACGACGGCGAGCAGGCGGAGGAGGTCGTCCCTAGCGGGGAAGAGGCCGGGAGGGGGCTCGCCGAGAGGCCACCGGGATTTGGACCTGCGCCGCGCCCGCGACGGCATCGGCATGGCTCCGCCGCCGCCTGCTCACACTTGCCCCTTTTGCTGGTATATCATCGAGTCGACGGGATGCTGGGCT

Coding Potentia
Explanation CPC Score
noncoding -1.05671
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0192600.2 3 21531 A G
Osa03LNT0192600.2 3 21699 T G
Osa03LNT0192600.2 3 21861 C T
Osa03LNT0192600.2 3 22847 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0192600.2 osa-miR5834 Cleavage 5.0 17.083 1 21
Osa03LNT0192600.2 osa-miR156b-3p Cleavage 4.5 13.366 1 21
Osa03LNT0192600.2 osa-miR444b.2 Translation 4.5 13.937 1 21
Osa03LNT0192600.2 osa-miR444c.2 Translation 4.5 13.937 1 21
Osa03LNT0192600.2 osa-miR1857-5p Translation 5.0 21.701 1 21
Osa03LNT0192600.2 osa-miR1428b Cleavage 3.5 14.416 1 21
Osa03LNT0192600.2 osa-miR1428c Cleavage 3.5 14.416 1 21
Osa03LNT0192600.2 osa-miR1428d Cleavage 3.5 14.416 1 21
Osa03LNT0192600.2 osa-miR1428e-3p Cleavage 3.5 14.416 1 21
Osa03LNT0192600.2 osa-miR2055 Cleavage 3.5 13.303 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus