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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0193000.1

AGTGCTACCCACTCTCAGCGCCACACCTCGATGTCGTCAAGGCGAGGGGGAGAATCAGGCGGCGGCGATTCTCCTCGCCGGCGGGAGGAGGCCAAGAGCACGACTCCTCGGCTGTAGCCAGGCTCAGCCGGTGGGCGCAGTGCGGCGCCCTCCGCTGAGATGTCATCGAGGGGATGGGGCGAATCTGGCGGCGGCGATCCGCCTCGGCTGCAGGGGGATTCCAGCTCGCGTAGCAAGGCTAAAAGCCGGACAACATCGCTGCAGCCAGGCTCAGTCAGCGAGCATGTTGCGGCGTCCTCCGCCGCCGCCGTGGAGACAGGCTTGGAGTTCGGCAAGGTTGACGGCGAGGCGCACGCACCCGCTCCCCTGCACTTGGCAAGGCACCAACAGTTGTTCTGTGTTCATCAAGCAATGATGCGCTGAATCGCAGGGCAGTTGCTGGTGGTCTTGATTTGGATCCAAAAAGGTCAGGCGTCGAGATCCAAAAAAGCAAGCAAATAATCAATCTGCAATGGGGGGTAGGGGGGTCAATGATGTGTTCAGCTATAACTTTGCTATTCACATATATACTACTTCTGTGAGCTACAAGTTTTGTTATCTACTAGTTTTTTTCATTTTCGTTAAATGCACTTAGTTTTGTCTACCTCTAACAATGTTTAGTTTTGTCCGCTCCTGATAATACCATTTTTTTGACCAAATCAGTTAGACAGTCTTGAAAACTAGCTATGTATGTATGTACTAAAATGAGTAGTTTTGTAAGCAAACTTCAATCATGTAGAGTAAATTTCAGTGTAAAAGCTTGTGTTATCTGAAATACTAGGTGTCAAGGCCTCCATGGGTGCATTTTTAAGATTATCCTTGTTGATCATAGATGATGTTTTCATTTTCTGGACATCATTAGCGCATCAATTCCATTTTTTTCTCCTTTTCTGGTTTATGGGCATGGCATCAATTGGCTCTGTTCTTATGCCCTATTATGATAAAAAATTAAGATGTTGTGCACCAATATATCTATTTGTTTGACTCTCCTTCTTCTCCTCCATCTTCGGCGTGATCTCCATGCTTTTAATGACACATAGTTTTGTTAGTTTTGACTTCTGCTAATTTTTGAAATCACAAGTTGTGCTCTCTGTAGAACTGTACTCTGCTAGTGATGTGTAAACTGAGTTCTTGCAATTTTTTGATAGGGAACGGGTGAAATTGAGTTGCCAATTTTTGGACTGAAGAAGTAGTCTCATTTTGTGGACAATTTTTTTGCTGAGAGCCCATGTTTGCAGAATGAAGGGGTCCTACCAGAGCAATGGCTCCTAGGGCGCCTAATGATGTGTTGTGATGCAGGTTTAGTGATTCTGTTTAGTGCAAAGTTCAGTAAATTTTTCAGACATGGATGTGATGGCAAAGTTCAAGTGGTTTTGTTTAGTGCAAAGTTTAGTAAATATTTCAGCAAATATCATCTCCCAAAAAATGTTCAATTAAGTAATT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0476572
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0193000.1 3 183851 A G
Osa03LNT0193000.1 3 184151 A T
Osa03LNT0193000.1 3 185878 A G
Osa03LNT0193000.1 3 184105 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0193000.1 osa-miR5535 Cleavage 2.0 12.348 1 22
Osa03LNT0193000.1 osa-miR5538 Translation 4.0 14.334 1 22
Osa03LNT0193000.1 osa-miR5835 Translation 4.0 12.796 1 24
Osa03LNT0193000.1 osa-miR5517 Cleavage 4.5 24.044 1 21
Osa03LNT0193000.1 osa-miR5519 Translation 5.0 13.758 1 21
Osa03LNT0193000.1 osa-miR5519 Translation 5.0 14.788 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus