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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0193100.1

GCAGTCCCGTTGCAGGAGACAATACGTAATACTCCCTCCTTCCATTTGAACTAACCAATAATAACAATAACTAACAGATAATATATAGTGTCAACTCCAAAAGTTATTCAGATCATACATTATGATGGGTAGAACAGGGTGTTGAAAGATTATTCAGAAGATATCAGCGATGACGGTGCCATTAGACACGTGGCATAGCGACTTGTTCTTTTTCATTCGAAGCTTAAGTTTGGTATTTCCACTGCCATCGCCGTCGTGTCCAACCGGCAACACCTCCACACCGGTGAAGACTTCAATCCTGTCAATTATTTCACCGTCGTCCATAGACACAATGCGGAAGAATCTTGCAATGCAGAACCTGCCCGAGCCCAGGTTGACAAGCTGCGGATCATGTGATTCCAGCCAACCCTTAGGTGGGTCAAATTCCTTCCAATCGCCAATAAGTTGTGGCTGGGAGTGGGAGTCCATGGTGGAGAGATCAGCAGCAGCCAACGGCGACATGGTCCTGGCCTCAGTCGAGAAGCCAAACCAGAGCTTGAGCTCAGGGACATACACAACCTTGCCATACAAGGGTAGATTCCCATTACCGACTTCCCATGTGTTTCTCGCTGTGTCCAAGCAGTAGGTTGCGTTGCAGCTGTTGTGGGATATGCAGATGTTAGAGCCGACCACTGCATAGGATGTGATCTTGGGGTAGGTGAAGCAGCAGGTACGATCAGAGACGAATGGCGGTGGCCGGAGGAGGTGGCAGTTCCATGGGCCCTCAAAGATGTTGCTGCACACAAAGGCCTCAAACTGATCACTCAGCTTCACATCGCCCTTCTCTGGCTCAGGAACCCTCTCCATGACATAGAGGCTGCCACCGCCAACGCTGGGATGGTCATTGGCATCAGCAGTACTTGGGATGAATAGAGAGATGGGCCGTGACTTGGGCTTGTGGAGGTTTGGGATACTCACCACGGCGCGCGTGTCGGCGTCACAAAGGAACATACGCCTGGTGTGGTCCGCTATTACCACCTTGCGATCTACAAGGGGGAAGCAGTCGAGAGAAATCTGGTCGGATCCATGTGTAGAACAAAACTTGAGGATGGGTCTGGGAAGCCGAATCCTCTCCATCTTTAAGCCTGCTGCCTTCTTCTTGGGATTACAGGAGTCGGACACCAGTGTCTGAGAGGTGTAGTCTTCTTGCACAGCTGCTGACTCTGATCCATGTGCGATTGTTGTTGGTGGTGGTGGTGTAGCGGTGTTACCGAACAGCTGGCCTGCCAGATCGACGCAGCGTAGCCATTTGGCGCCTTGGAAGGGGACGTCGACGATGAGATTCTTAGCCCGACGCGACAGGCCCATCTTCAGAGTCGATCAGCAACTCCCAAGTTCCAGCTCCAATAAGCAGCAGCAGCAAACAGAAGATGTAGCCAGCCGAGCCGAGATAAAGCTTCCTTGAGGCGCGCGGTCGGAGCAGGAAGTCAGACTGGGATGGAGTCTCGACGCCTAAAAGTTTGGGTCTCCAGCAAACAGATGCGACCGCAGTGGATTGCGCGTCCTGCCCTGCCCTGCGATGGATCTATCAAAGAGTGTTCAGACCTGAGGAGCGCGGTCCGGTCGGAGAAGGGGAAAGGGGCCAGCGGCGGCCGGCGGGGATGGGAGTGGCGAATCGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.973241
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0193100.1 3 296054 C T
Osa03LNT0193100.1 3 295955 C T
Osa03LNT0193100.1 3 296033 A C
Osa03LNT0193100.1 3 296921 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0193100.1 osa-miR1858a Translation 5.0 19.771 1 21
Osa03LNT0193100.1 osa-miR1858b Translation 5.0 19.771 1 21
Osa03LNT0193100.1 osa-miR2924 Cleavage 4.0 20.746 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus