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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0193300.2

GGAAAAAAAATTAAATGATCTTCCCACATCAAAATGCAACGGGCCGCTACTATTTATGTACATTCCCGCATTTCTTCCGATGATGCCACTGCAGCTAGTGTTACTGATCAGCAGCTCTACATGTTTTTACTAATTAACAAGAAACCGTATTGATCTTTGCAGGGAGGCATCCCAGTCTTCTACCAGCCGGAGCCCCGATGAGCTTGAAGAGTCTCCACGGATTTGCCGGAGTTGAGTAGTAGATGTCGACGGGGCCATTGGTGCAGTTGATGCTTGAGTCGACGACCCTGGTGTGACGGCGACCACGGTGGCGGTCAAGGTAGACGACGATGATGCTGATGTCGTCGTGGAAACGGCGCCTCACTTCTCTATCGTCTTCAGATGGAAGTTGACCTCCCTCTTCCTCGTGGCTTCCTTCAAAGCGGCCTTTACCACTCTGTTTGCTACATCCGTTCTTGGATTCTTGAAGACAATCTGCACCGCAGCGTCATCGCTAAGATGCTCCTAGGGACCATCTGAAGCAAATATCAGGAACATATCATTTGGTTTCAGCTTGCGAACTTGAATTGATGGTTCTGCACTAAGAGCTAGCTGCTTTAGAGGAATAGGGGGACCAATGCTACGAAACACGGGATCCATGCTATACTCTTGTTCCTTCAAGTAAACATCACCAATGGTTCTCGATACCTGACAGTAGAAGAGTAAAATTTTAGCCCATGTCTCTAGTATTTGACATAAAAATCTTATGGTATCTTAAGATAATTAGGTAAGTGAACCGAGAGATAAAGCCTGATCAAAATATCAAACCATGTCCAAGTGACCAAGTTCATTACTCTGGTAAGATATAATAAAAGTAGCTGTCATACTTTCACACTTGGCACTATAAATTGTGAAAAGTAAACTATGAAAACAATATAACTCATCGTTTTTCATTAGTTTTCCTGGATAAGCAAGAGTAGCTGTCATACTATGCACAGTTGGCAGTACAAACTGTGAAAACAAAAATACTAAAACTTGGTCATTTTTGCTCGTTTTAAAACAATGACAAATAGTAGTCACAAGCTCACAGCATCTTCTTAAAGCACTGCCTGCTGAACTGGTCCAAGTCCTGAATGATCCCCTTCACCCTCCACGCAACCCTGGTGTGCACCAGGATCTGGCCATCCAATCCTGTGGGCTGTGTTGGAGTCACCTCCCGCATCGAGTTCTTCCGCGGCTCTTCTTCACCGAAGAAGAGGAGGGGAGGGGGACACAGGCACCGACTGCAACCACAACACCGTCGTGAGGGGACACTGGCGCCGGTTCCGAAGCCGCCACCGGCCCAGACGTAGCCAGGGGAGGGGAACACCTACGCCGGTCACGTAGGCTTGGCCGCAGGCCCCTTTGCGTTGGCTCCGATGGGCGGCGGTCGTGCAGCCGGCTCCGCTCTTGCGTGCAATGCCCTCTGCTTCCACCCAGCCAACGCCAGCCGGGTCAGCGTAGACCGACCGTCCGGCCGGCACCAGATCCAGCTTTCACCCTCTCCTCTACGTGGATGCGAAGGAGACCACAACGCGTCCGGATAAAGGTAGACGAAGCCGAAGCTGAAGAGGAATCCAAAGAATCCCAAGCCAAC

Coding Potentia
Explanation CPC Score
noncoding -1.10305
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0193300.2 3 277859 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0193300.2 osa-miR5833 Cleavage 5.0 17.537 1 21
Osa03LNT0193300.2 osa-miR6248 Cleavage 4.5 14.606 1 21
Osa03LNT0193300.2 osa-miR2865 Cleavage 5.0 23.674 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus