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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0193500.1

GGAATTTCTTTCACAACAGCTCATATCATCATCTGTTACAGTCAGTTGCAACTATCATCAACACACTCGCTCTATTCAGGAAAATTGGCAACACAGCAAAGAAAAAACCCGAGTCAACAGACCTCCAACGCTCCAATGAAATAACAAACTTACTTCACTGTTCCTTGATCTATACCTCATCATCCCCCCCCCCCCCCCCCTTCACCGAAAATGGCCAAGGCAAACAAATCTACATCGTCTGCAAGCTGGGCGCCGAGGCTTTTTCGGCGAGCACTTACTCAAGTAAACAGGTGGCCCTGTTCGGTGGTCTCTAGCTCTCTTCCAAGCTGCATGTGCACAAATTTCCTGTGCTTCTGCTTGTTGATCCTGGCGCTTAACCTTCTCACCTGTGATTGAACCCAGAAAATCTTTGCAGAGAACCATTGCCACCAATCATATGTGACTCAATCCTTCTTTCTTGGCCTAAATGCATTCTTTCAGGCCAAACAGAATTCAACCTCCTTGCGAAGTCCTCCACTTCTCTGTCAAGCTCTTCCTGCATTGCAGGATCAAGTCCATCATCAAGGTCAGCATCTTCAAAGGGGTACTCAACATCATCTTGCACATCTGAGCTTTGGCAAGGTGTTCTAGAAATATTACCAGTACCCGCATTGAATGGAACTCCACGAGTAGCTTCCTCCTTGTTTACAGGTTCAGGATTAGCTTTTGGGGGGTTCTTAGAATGGTCCTTTCTTCTCTTGTTCTTTTTCTTATTCTTAGAAGCTTTCCCACCTCCAGAACCTCCATCCCCATTTATAAAACATAGTATCTCATCCAGTGACCGCTCATCTTTTTGCTCTTCTTGTACTTGAACATCCTTCAGTTTCTGGCGCTCCTGTAGTTCTTTCCGCTTCTTTGCATATAATCGATTCAACAAACGGATCCTGGGATCATCATTTATATTTTTCAGGGGTTCCAATTTCTCTTCCTCTGTTAAGTCATCTGGCAAATGGAAAATATCACGAATTTCCTCAGGTGTCTTTCCTTCAATTATTCGAGCAAGTGCTCGACTGGTAAGATCAACCAATGGCTTTAATTGGAGACTATCAGCCGCCGATGTCAGCTCACATAGTCTTTCTGTATCTATTCTGACAAACTTTTCATCAAATGATTTTCGCTCCTTGTTTGAGCGCCCTGGGACTTGATGAAACCGACAATAGTCAAGAATCAAACTCAAACTTGTAGGGTTAACTCTTTCTGGGAGAGCAATTGCATGATTTTTTGATGATCCTGTTCCATTTTTTACTATCTCTCGACATATCATAGGGCAAAACATGGCAACCTCCTCCTCCACTTGTTGTATGGAACCATCAAAGCACTGAAGCCAAATATAACTCTTCAACGCCTCTGGCTTTATTACTGCCAACTCACTTTCTGACATTATTGCCAATTCCAGAGAAACAACAAAGCCGCCAATACAATACACCAGAAAATTTACAAGAAACTCCTTTCGGGGTATAACACCTGCCAGTACTCCAATGGCCGGAAATTATGTCGACAAACTTTTATCCTGTACAACAAATCACAGTACCCTGTTTTTGGTCTTCAATTGGATAGTGACCTTATTTCTCTTTTGATTCAACAATGGTCTTTATTTATGACTAATGGAATGAATGATCTTGTTTAGCCTCGTGGCGGAGAGAAGGAGAGGCTGGAGAGGGAGAAGGCGGCGGTGACGGCGGCGGCGGCGGCGCCGGCGGCGAGGAGAGGAGAGGAGAGGGGGAGGTTGTGGTTTTTTGGTTGGTGGGGGTGCGCCTGCGGTTTGGGG

Coding Potentia
Explanation CPC Score
noncoding -1.04384
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0193500.1 3 406203 A G
Osa03LNT0193500.1 3 407214 A G
Osa03LNT0193500.1 3 408773 A C
Osa03LNT0193500.1 3 409125 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0193500.1 osa-miR5526 Cleavage 5.0 17.175 1 21
Osa03LNT0193500.1 osa-miR5791 Translation 4.0 21.592 1 21
Osa03LNT0193500.1 osa-miR1862e Cleavage 3.0 13.67 1 24
Osa03LNT0193500.1 osa-miR5507 Cleavage 5.0 17.137 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0193500.1 3 qtl3.1 Resistance or Tolerance Drought tolerance RM7332 RM545
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus