>Osa03LNT0193700.1

GATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCTTCTCTGGCTTCTTCTCTTCCTTGGCAGGTCCAACAGAAACGATGTCGATCTTGCCGATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCTATGATGGTCATCTTGTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCGATCGCTTTCTGCTTCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTTCTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCAGCAGAGGGAAGGTTGGATCAGGGAGACAGATAGAAATGTGAGCAATGGGAAC

Explanation	CPC Score
noncoding (weak)	-0.678224

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0193700.1	osa-miR5544	Cleavage	5.0	20.89	1	22
Osa03LNT0193700.1	osa-miR5820	Translation	4.0	17.489	1	21
Osa03LNT0193700.1	osa-miR156b-3p	Cleavage	5.0	17.729	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0193700.1	3	qRDW3-1	Resistance or Tolerance	Drought tolerance	RG348	RG104
Osa03LNT0193700.1	3	qRTV3-1	Resistance or Tolerance	Drought tolerance	RG104	RG348
Osa03LNT0193700.1	3	nan	Morphological trait	Root	RG104	RG348
Osa03LNT0193700.1	3	nan	Morphological trait	Root	RG104	RG348
Osa03LNT0193700.1	3	dth3.1	Resistance or Tolerance	Drought tolerance	RG104	RZ329
Osa03LNT0193700.1	3	nan	Resistance or Tolerance	Drought tolerance	RG104	RG348
Osa03LNT0193700.1	3	nan	Resistance or Tolerance	Drought tolerance	RG104	RG348
Osa03LNT0193700.1	3	QPh3a	Morphological trait	Dwarf	RG104	C515
Osa03LNT0193700.1	3	qST3-2	Physiological trait	Eating quality	nan	nan
Osa03LNT0193700.1	3	qtl3.1	Resistance or Tolerance	Drought tolerance	RM7332	RM545
Osa03LNT0193700.1	3	nan	Resistance or Tolerance	Other soil stress tolerance	R1468A	R1468B

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus